View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2171_low_12 (Length: 299)

Name: NF2171_low_12
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2171_low_12
NF2171_low_12
[»] scaffold0155 (1 HSPs)
scaffold0155 (1-282)||(25803-26084)


Alignment Details
Target: scaffold0155 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 25803 - 26084
Alignment:
Q  1 catcttttgcgagtattgggcatatatcatttttatgcagactatcaatacaatcatcaatgtgttgcataacaaaacctatttgtgaagccatgtctgg 100  Q
    |||| ||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25803 catcctttgcaagtattgggctagtatcatttttatgcagactatcaatacaatcatcaatgtgttgcataacaaaacctatttgtgaagccatgtctgg 25902  T
Q  101 ataatttttgagctccaaatctattttcgcacccaaaagcctaccgcgaatgctatcatcgccatcgaaatctattgcacaatgagtataatagtttctt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25903 ataatttttgagctccaaatctattttcgcacccaaaagcctaccgcgaatgctatcatcgccatcgaaatctattgcacaacgagtataatagtttctt 26002  T
Q  201 accgtaacatttctttgcaaattaatgacaagtttgtatgcaatatagaaattgtccttaaccacaccaatagtgtaatttg 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26003 accgtaacatttctttgcaaattaatgacaagtttgtatgcaatatagaaattgtccttaaccacaccaatagtgtaatttg 26084  T

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