View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2171_low_13 (Length: 299)
Name: NF2171_low_13
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2171_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 10278885 - 10279145
Alignment:
| Q |
18 |
ctaatctgatcgaccaccacattattttggtacctaatgaactaagctaaagcaataaatatagaagacataggtgcatataattattacaaagaagtaa |
117 |
Q |
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| T |
10278885 |
ctaatctgatcgaccaccacattattttggtacctatcaaa--aagtataagcaataaatatagaagacataggtgcatatagttattacagacaagtaa |
10278982 |
T |
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| Q |
118 |
ctccgtatattgttttctcatataattggtccaaaaaagt--atcttccattatatgtgttcagtcagtcacagtgtcgatatgttcgtacagtttcact |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||| ||| |||| ||||||||||||||||||||| | |
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| T |
10278983 |
ctccatatattgttttctcatataattggtccaaaaaaatgcatcttccaatatatctgttcactca----cagtttcgatatgttcgtacagtttcggt |
10279078 |
T |
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| Q |
216 |
gtgaatcataggtccattattgaattaaagattctgacacattcatataacaataacaactataata |
282 |
Q |
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| T |
10279079 |
gtgaatcataggtccattattgaattaaagattctgacactttcatatagcaataacaactataata |
10279145 |
T |
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