View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2171_low_14 (Length: 281)
Name: NF2171_low_14
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2171_low_14 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 30006082 - 30005829
Alignment:
| Q |
18 |
atacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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|
| T |
30006082 |
atacacaatatcctcaataagattctctacaacctcactaacattcacaacctcaccctccaaggcagctttctccaaagatataaccaaaacatccaac |
30005983 |
T |
|
| Q |
118 |
ttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30005982 |
ttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcag |
30005883 |
T |
|
| Q |
218 |
aaaaagccatccctttggaaccataagacatgagatctgatccttgaacctttg |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30005882 |
aaaaagccatccctttggaaccataagacatgagatctgatccttgaacctttg |
30005829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 29952230 - 29952006
Alignment:
| Q |
18 |
atacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| || |||| ||||||||||||| |
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|
| T |
29952230 |
atacacaatatcctcaataagattctctacaacctcactaacattcacaacctcactcaccaaagcagctttctccaatgacttaatcaaaacatccaac |
29952131 |
T |
|
| Q |
118 |
ttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcag |
217 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
29952130 |
ttttccttcctaatagaaccaaacatctcaacttttgaagcactaagaagttttaaagtgcaaagtttcctcacactacgccaataaggaccatacttag |
29952031 |
T |
|
| Q |
218 |
aaaaagccatccctttggaaccata |
242 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
29952030 |
aaaaagccaaccctttggaaccata |
29952006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 30045072 - 30045325
Alignment:
| Q |
18 |
atacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaac |
117 |
Q |
| |
|
|||||||||||| || || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| | |||| |
|
|
| T |
30045072 |
atacacaatatcttctattagattctctacaacctcactaacattcacaacctcaccaaccaaagcagctttcttcaaagtgttaaccaaaatactcaac |
30045171 |
T |
|
| Q |
118 |
ttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcag |
217 |
Q |
| |
|
| ||| || |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045172 |
tcctcttttctaataggaccagacatctcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcac |
30045271 |
T |
|
| Q |
218 |
aaaaagccatccctttggaaccataagacatgagatctgatccttgaacctttg |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||| ||||| |
|
|
| T |
30045272 |
aaaaagccatccctttggaaccataagacatgagctcagatccttgaatctttg |
30045325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 29963335 - 29963110
Alignment:
| Q |
18 |
atacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaac |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||| || ||||||| || || |||||||||||||||||| |
|
|
| T |
29963335 |
atacacaatatcttcaataagattctctacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaac |
29963236 |
T |
|
| Q |
118 |
ttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcag |
217 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||||||||||||||||| |
|
|
| T |
29963235 |
tccttcttcctaataggaccaaacatctcaacttttgaagcactaagaagtttcaaagtgcaaagtttctttacactacgccaataaggaccatactcag |
29963136 |
T |
|
| Q |
218 |
aaaaagccatccctttggaaccataa |
243 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
29963135 |
aaaaagccaaccctttggaaccataa |
29963110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 30011463 - 30011688
Alignment:
| Q |
18 |
atacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaac |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||| || ||||||| || || |||||||||||||||||| |
|
|
| T |
30011463 |
atacacaatatcttcaataagattctctacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaac |
30011562 |
T |
|
| Q |
118 |
ttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcag |
217 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||||||||||||||||| |
|
|
| T |
30011563 |
tccttcttcctaataggaccaaacatctcaacttttgaagcactaagaagtttcaaagtgcaaagtttctttacactacgccaataaggaccatactcag |
30011662 |
T |
|
| Q |
218 |
aaaaagccatccctttggaaccataa |
243 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
30011663 |
aaaaagccaaccctttggaaccataa |
30011688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 30070902 - 30071148
Alignment:
| Q |
18 |
atacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaac |
117 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| | |||| |
|
|
| T |
30070902 |
atacacaatatcttctattagattctctactacctcactaacattcacaacctcaccaaccaaagcagctttcttcaaagtgttaaccaaaatactcaac |
30071001 |
T |
|
| Q |
118 |
ttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcag |
217 |
Q |
| |
|
| ||| || |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30071002 |
tcctcttttctaataggaccagacatctcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatagtcag |
30071101 |
T |
|
| Q |
218 |
aaaaagccatccctttggaaccataagacatgagatctgatccttga |
264 |
Q |
| |
|
||||| | ||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
30071102 |
aaaaaactatccctttggaaccatataacatgagctcagatccttga |
30071148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 29944109 - 29943877
Alignment:
| Q |
18 |
atacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaac |
117 |
Q |
| |
|
||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29944109 |
atacacaatatcctctataacattctctacagcctcactaacattcacaacctcaccctccagagcagctttctccaaagatttaaccaaaacatccaac |
29944010 |
T |
|
| Q |
118 |
ttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||| |||| ||| ||||||||||||||||||| | |||| || |
|
|
| T |
29944009 |
ttctccttcctaataggaccaaacatctcaactttcgaagcactaagaagttttgaagtacaaagttttctcacactacgccaataagagtcgtacttag |
29943910 |
T |
|
| Q |
218 |
aaaaagccatccctttggaaccataagacatga |
250 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||| |
|
|
| T |
29943909 |
aaaacgccaaccctttgcaaccataagacatga |
29943877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 29999644 - 29999397
Alignment:
| Q |
18 |
atacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||| || | |||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||| ||||| |
|
|
| T |
29999644 |
atacacaatatcctcaataagattctcgacaatctcactaacattcacaacctcacctaccaaagaagctttcttcaaagtgttaaccaaaacacccaac |
29999545 |
T |
|
| Q |
118 |
ttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcag |
217 |
Q |
| |
|
| ||| || ||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
29999544 |
tcctcttttctaataggacccgacttctcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataaggaccatactcag |
29999445 |
T |
|
| Q |
218 |
aaaaagccatccctttggaaccataagacatgagatctgatccttgaa |
265 |
Q |
| |
|
|||||| || |||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
29999444 |
aaaaaggcaaccctttagaaccataggacatgagctctgatccttgaa |
29999397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 29990940 - 29990708
Alignment:
| Q |
18 |
atacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaac |
117 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| | |||||| ||||||||||||||||| |||||| |||||| | ||||| |||||||||| | ||||| |
|
|
| T |
29990940 |
atacacaatatcttcaataacattctctacaatctcactgacattcacaacctcacctaccaaagaagcttttttcaaagtgttaaccaaaatacccaac |
29990841 |
T |
|
| Q |
118 |
ttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcag |
217 |
Q |
| |
|
| ||| | ||||||||||| || ||||||||||||||||||||| ||||||||||||||| | |||| | ||||||||||||||||| | |||| || |
|
|
| T |
29990840 |
tcctctgttctaataggacccgacttctcaacttttgaagcactaagaagtttcaaagtgcagagtttctttacactacgccaataagggtcgtacttag |
29990741 |
T |
|
| Q |
218 |
aaaaagccatccctttggaaccataagacatga |
250 |
Q |
| |
|
|||| |||| ||||||| |||||||||| |||| |
|
|
| T |
29990740 |
aaaacgccaaccctttgcaaccataagatatga |
29990708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 43805838 - 43805738
Alignment:
| Q |
145 |
tcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataag |
244 |
Q |
| |
|
|||||||| |||||||| ||||| | ||||||||||| ||||||| | |||||||||| | ||| || |||| |||| ||| |||||| |||||||||| |
|
|
| T |
43805838 |
tcaactttagaagcacttaaaagctgcaaagtgcaaaccttcctcatattacgccaataggcaccgtattcagcaaaaaccaaccctttagaaccataag |
43805739 |
T |
|
| Q |
245 |
a |
245 |
Q |
| |
|
| |
|
|
| T |
43805738 |
a |
43805738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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