View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2171_low_15 (Length: 280)
Name: NF2171_low_15
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2171_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 8846284 - 8846035
Alignment:
| Q |
20 |
gtatatgaggatatttagaagtaattagcttaagattgatcccaagaccaccaccaacatcaacaagtttattgatgtgttcaaaaccttcatagatttc |
119 |
Q |
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| T |
8846284 |
gtatatgaggatatttagaagtaattagcttaagattgatcccaagaccaccaccaacatcaacaagtttattgatgtgttcaaaaccttcatagatttc |
8846185 |
T |
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| Q |
120 |
aagaaccctcttcatgactatagttgtacaattggccatagcattgttgaaaacatcattaaaccttggatccacaattggatattcaaatgcatgcatg |
219 |
Q |
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| T |
8846184 |
aagaaccctcttcatgactatagttgtacaattggccatagcattgttgaaaacatcattaaaccttggatccacaattggatattcaaatgcatgcatg |
8846085 |
T |
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| Q |
220 |
ccataaaccctattgaatggtatgcctccttccataattgcacctttcat |
269 |
Q |
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| T |
8846084 |
ccataaaccctattgaatggtatgcctccttccataattgcacctttcat |
8846035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 254
Target Start/End: Original strand, 49098571 - 49098764
Alignment:
| Q |
61 |
ccaagaccaccaccaacatcaacaagtttattgatgtgttcaaaaccttcatagatttcaagaaccctcttcatgactatagttgtacaattggccatag |
160 |
Q |
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| T |
49098571 |
ccaagaccaccaccaacatcaactagcttagttatgtggtcaaaaccttgataacaatcaataatcctcttcatgtttatagttgttgaattaaccatag |
49098670 |
T |
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| Q |
161 |
cattgttgaaaacatcattaaaccttggatccacaattggatattcaaatgcatgcatgccataaaccctattgaatggtatgcctccttccat |
254 |
Q |
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| T |
49098671 |
ctttgttgaaaacatcattgaaccttgggtccacacgtggatactcaaacgcatgcattccataaaccctattgaacgctattcctccttccat |
49098764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 49102241 - 49102295
Alignment:
| Q |
170 |
aaacatcattaaaccttggatccacaattggatattcaaatgcatgcatgccata |
224 |
Q |
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| T |
49102241 |
aaacatcattgaaccttggatccacaagtggacactcaaaggcatgcattccata |
49102295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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