View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2171_low_17 (Length: 263)
Name: NF2171_low_17
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2171_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 481126 - 481230
Alignment:
| Q |
9 |
gatgaagaggagatttatctaaactaggatcaagctgtcctaatatatttgctgtacttggtggaaatcatgctctttactggcaagagcacccaccatc |
108 |
Q |
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| T |
481126 |
gatgaagaggagatttatctaaactaggatcaagctgtcctaatatatttgttgtacttggtggaaatcatgctctttactggcaagagcacccaccatc |
481225 |
T |
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| Q |
109 |
ctgat |
113 |
Q |
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||||| |
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| T |
481226 |
ctgat |
481230 |
T |
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Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 481230 - 481315
Alignment:
| Q |
160 |
ttgcatgggtatcgaccgtcttgactcacttatgcatcgagtttaacgtttcatgcattcacaagaccaggaatctgtctggctag |
245 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
481230 |
ttgcatgggtatcgaccgtcctgactcacttatgcatcgagtttaacgtttcatgcattcacaagaccaggaatctgtctggctag |
481315 |
T |
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