View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2171_low_22 (Length: 232)
Name: NF2171_low_22
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2171_low_22 |
 | |
|
| [»] chr4 (8 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 39581143 - 39581375
Alignment:
| Q |
1 |
ccgcaattgatgaagtatgtgtgttggggattatataatccaagcgagggaaattgtaatgatgagaattgaagaagaaaagttagtagaacgatagact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39581143 |
ccgcaattgatgaagtatgtgtgttggggattatataatccgagcgaggaaaattgtaatgatgagaattgaagaagaaaagttagtagaacgatagact |
39581242 |
T |
|
| Q |
101 |
gttgaattgccatggggagagagttgataattgtgtttgtttgaatga-nnnnnnnnaagctgtgatgactgctattcatagaagttagtagaagtaggg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39581243 |
gttgaattgccatggggagagagttgataattgtgtttgtttgaatgatttttttttaagctgtgatgactgctattcatagaagttagtagaagtaggg |
39581342 |
T |
|
| Q |
200 |
agtgggagaagagaagggggagaccaatgaaga |
232 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
39581343 |
agtgggagaagagaagggggggaccaatgaaga |
39581375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 39544750 - 39544887
Alignment:
| Q |
1 |
ccgcaattgatgaagtatgtgtgttggggattatataatccaagcgagggaaattgtaatgatgagaattgaagaagaaaagttagtagaacgatagact |
100 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| ||| || || ||||||||||||||||||| ||||||||||||||||| |||| || ||||| | |
|
|
| T |
39544750 |
ccgcaattgatgaagtatgtgtcttggtgatcgtat---ccgagtgagggaaattgtaatgatgcgaattgaagaagaaaagcaagtaaaatgatagtgt |
39544846 |
T |
|
| Q |
101 |
gttgaattgcca-tggggagagagttgataattgtgtttgt |
140 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||||||||||||| |
|
|
| T |
39544847 |
gttgaactgccattggagagagagttgataattgtgtttgt |
39544887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 39511767 - 39511832
Alignment:
| Q |
57 |
taatgatgagaattgaagaagaaaagttagtagaacgatagactgttgaattgccatggggagaga |
122 |
Q |
| |
|
||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||| |||||||| |
|
|
| T |
39511767 |
taatgatgagaattgaagaagaaaaattagtaaaatgatagactgttgaattgtcattgggagaga |
39511832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 39525494 - 39525598
Alignment:
| Q |
38 |
atccaagcgagggaaattgtaatgatgagaattgaagaagaaaagttagtagaacgatagactgttgaattgccatggggagagagttgataattgtgtt |
137 |
Q |
| |
|
|||| |||||||| || | ||||||||||||||||| |||||||| |||| | |||||| |||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
39525494 |
atccgagcgaggggaagtataatgatgagaattgaataagaaaagcaagtaagatgatagagtgttgaattgccat--ggagagagttgaaaattatgtt |
39525591 |
T |
|
| Q |
138 |
tgtttga |
144 |
Q |
| |
|
||||||| |
|
|
| T |
39525592 |
tgtttga |
39525598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 39522140 - 39522194
Alignment:
| Q |
163 |
tgatgactgctattcatagaagttagtagaagtagggagtgggagaagagaagggg |
218 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
39522140 |
tgatgattgctattcatagaagttggtagaagtagggagt-ggagaagagaagggg |
39522194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 39511867 - 39511913
Alignment:
| Q |
157 |
aagctgtgatgactgctattcatagaagttagtagaagtagggagtg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
39511867 |
aagctgtgatgactgctattcatagaagttagtacaagtaggcagtg |
39511913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 39521963 - 39522065
Alignment:
| Q |
4 |
caattgatgaagtatgtgtgttggggattatataatccaagcgagggaaattgtaatgatgagaattgaagaagaaaagttagtagaacgatagactgtt |
103 |
Q |
| |
|
||||||||||||||||||| ||| |||| ||| || || ||||| ||||||||||||||||||||||||| ||||| || |||| |||||| ||| |
|
|
| T |
39521963 |
caattgatgaagtatgtgtcttgaggatcgtat---ccgagtgaggggaattgtaatgatgagaattgaagaaaaaaagcaaggagaaagatagagcgtt |
39522059 |
T |
|
| Q |
104 |
gaattg |
109 |
Q |
| |
|
|||||| |
|
|
| T |
39522060 |
gaattg |
39522065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 39576656 - 39576727
Alignment:
| Q |
55 |
tgtaatgatgagaattgaag---aagaaaagttagtagaacgatagactgttgaattgccatggggagagag |
123 |
Q |
| |
|
|||| ||||||||||||||| |||||||| |||| || |||||| |||||||||||||| ||||||||| |
|
|
| T |
39576656 |
tgtagtgatgagaattgaagaagaagaaaagccagtaaaatgatagagtgttgaattgccattgggagagag |
39576727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University