View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2171_low_23 (Length: 231)
Name: NF2171_low_23
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2171_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 41457393 - 41457214
Alignment:
| Q |
25 |
tattccaagatattttgagattgtgtggactaaaagtattggtgccatgcaagtcaactagtcaagtagtgttctgcatgcatcatttgtgtttgagacg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41457393 |
tattccaagatattttgagattgtgtggactaaaagtattggtgccatgcaagtcaactagtcaagtagtgttctgcatgcatcatttgtgtttgagacg |
41457294 |
T |
|
| Q |
125 |
ttggagttgcattgtttgtagtatatatgatgttgaaaattatacaatttcaaaagtcacattgaacagaagtacagaacatga |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
41457293 |
ttggagttgcattgtttgtagt--atatgatgttgaaaattctacaatttc--aagtcacactgaacagaagtacagaacatga |
41457214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 41441248 - 41441102
Alignment:
| Q |
25 |
tattccaagatattttgagattgtgtggactaaaagtattggtgccatgcaagtcaactagtcaagtagtgttctgcatgcatcatttgtgtttgagacg |
124 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41441248 |
tattccaagatattttgagtttgtgtggactaaaagtattgatgtcatgcaagtcaactagtcaagtagtgttctgcatgcatcatttgtgattgagacg |
41441149 |
T |
|
| Q |
125 |
ttggagttgcattgtttgtagtatatatgatgttgaaaattatacaatt |
173 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
41441148 |
ttggagttgcattttttgtagt--atatgatgttgaaaattctacaatt |
41441102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University