View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2171_low_24 (Length: 215)
Name: NF2171_low_24
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2171_low_24 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 13481283 - 13481391
Alignment:
| Q |
107 |
atggattttcatcttggtaatggtttatcttttccaagacttcaacttcataatcaccctcaaatttctactactcctatgtataaccagttttcatctt |
206 |
Q |
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| T |
13481283 |
atggattttcatcttggtagtggtttatcttttccaagacttcaacttcataatcaccctcaaatttctactactcctatgtataaccagttttcatctt |
13481382 |
T |
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| Q |
207 |
ttggagaaa |
215 |
Q |
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| T |
13481383 |
ttggagaaa |
13481391 |
T |
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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 13481180 - 13481220
Alignment:
| Q |
4 |
atcatcatcatcaggtctctcttgtgattcaaaagactcag |
44 |
Q |
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||||||||||||| | ||||||||||||||||||||||||| |
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| T |
13481180 |
atcatcatcatcaagactctcttgtgattcaaaagactcag |
13481220 |
T |
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