View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2171_low_27 (Length: 203)
Name: NF2171_low_27
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2171_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 37189078 - 37189250
Alignment:
| Q |
17 |
aaaaaagtcattgactatggaaatggtttcaagacagagacaagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctg |
116 |
Q |
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| T |
37189078 |
aaaaaagtcattgactatggaaatggtttcaagacagagacaagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctg |
37189177 |
T |
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| Q |
117 |
gttaatttgttggtgcttgtgtttttggtcttgctgtttggtctctatgttaagaatgtaattaattcatttt |
189 |
Q |
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| T |
37189178 |
gttaatttgttggtgcttgtgtttttggtcttgctgtttggtctctatgttaagaatgtaattaattcatttt |
37189250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 37893981 - 37894153
Alignment:
| Q |
17 |
aaaaaagtcattgactatggaaatggtttcaagacagagacaagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893981 |
aaaaaagtcattgactatggaaatggtttcaagacagagacaagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctg |
37894080 |
T |
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| Q |
117 |
gttaatttgttggtgcttgtgtttttggtcttgctgtttggtctctatgttaagaatgtaattaattcatttt |
189 |
Q |
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| T |
37894081 |
gttaatttgttggtgcttgtgtttttggtcttgctgtttggtctctatgttaagaatgtaattaattcatttt |
37894153 |
T |
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