View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2171_low_3 (Length: 399)

Name: NF2171_low_3
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2171_low_3
NF2171_low_3
[»] chr3 (30 HSPs)
chr3 (89-257)||(29323269-29323437)
chr3 (89-243)||(28991088-28991247)
chr3 (89-215)||(13159282-13159408)
chr3 (89-243)||(44906211-44906364)
chr3 (92-215)||(45200154-45200277)
chr3 (96-243)||(31372936-31373082)
chr3 (89-257)||(29170461-29170629)
chr3 (89-257)||(28986106-28986263)
chr3 (130-243)||(50463200-50463318)
chr3 (89-243)||(18971756-18971910)
chr3 (89-243)||(26135532-26135691)
chr3 (96-257)||(38734008-38734166)
chr3 (89-243)||(45317055-45317213)
chr3 (133-257)||(40503843-40503972)
chr3 (102-243)||(25630977-25631118)
chr3 (135-257)||(42443834-42443961)
chr3 (89-211)||(46558921-46559041)
chr3 (89-257)||(16341524-16341692)
chr3 (89-212)||(53302520-53302642)
chr3 (89-212)||(53303687-53303809)
chr3 (135-215)||(9145299-9145379)
chr3 (151-257)||(24425923-24426032)
chr3 (130-257)||(42591005-42591136)
chr3 (166-226)||(33775104-33775164)
chr3 (89-133)||(25630939-25630983)
chr3 (130-188)||(55140075-55140132)
chr3 (89-147)||(33775050-33775103)
chr3 (89-129)||(24426032-24426072)
chr3 (199-258)||(7956107-7956166)
chr3 (229-257)||(9145390-9145418)
[»] chr1 (22 HSPs)
chr1 (89-243)||(5154119-5154273)
chr1 (89-243)||(26519876-26520035)
chr1 (89-257)||(31198783-31198951)
chr1 (89-243)||(29579554-29579713)
chr1 (89-243)||(8223158-8223311)
chr1 (132-243)||(35825387-35825503)
chr1 (89-251)||(21070062-21070223)
chr1 (89-216)||(44745703-44745825)
chr1 (132-243)||(48814595-48814705)
chr1 (132-243)||(50579293-50579409)
chr1 (97-212)||(26003580-26003685)
chr1 (136-216)||(34968311-34968391)
chr1 (89-207)||(36368646-36368759)
chr1 (130-243)||(4447243-4447358)
chr1 (136-257)||(13982556-13982680)
chr1 (127-215)||(7025850-7025938)
chr1 (152-243)||(38614391-38614482)
chr1 (166-213)||(24672687-24672734)
chr1 (157-215)||(10923818-10923875)
chr1 (96-175)||(37573425-37573503)
chr1 (91-157)||(1356822-1356888)
chr1 (171-259)||(1356731-1356824)
[»] chr4 (23 HSPs)
chr4 (89-243)||(31845891-31846050)
chr4 (89-257)||(28185051-28185219)
chr4 (89-243)||(49269214-49269368)
chr4 (89-243)||(13391106-13391255)
chr4 (89-243)||(1763844-1763995)
chr4 (89-257)||(28972951-28973119)
chr4 (132-243)||(48080553-48080664)
chr4 (89-215)||(55826067-55826192)
chr4 (89-257)||(6377043-6377210)
chr4 (132-243)||(7878580-7878691)
chr4 (97-215)||(55762267-55762384)
chr4 (89-243)||(34487442-34487591)
chr4 (89-243)||(51549455-51549604)
chr4 (89-243)||(7069315-7069468)
chr4 (130-215)||(11509159-11509244)
chr4 (89-243)||(41235585-41235740)
chr4 (96-209)||(42384179-42384292)
chr4 (124-251)||(18732556-18732684)
chr4 (153-261)||(32352524-32352633)
chr4 (132-209)||(47461789-47461866)
chr4 (135-243)||(36505538-36505653)
chr4 (164-244)||(13051595-13051674)
chr4 (96-136)||(48847703-48847743)
[»] scaffold0002 (1 HSPs)
scaffold0002 (89-215)||(147580-147706)
[»] chr7 (13 HSPs)
chr7 (89-258)||(32455393-32455567)
chr7 (97-243)||(29646597-29646748)
chr7 (97-258)||(46510590-46510756)
chr7 (89-243)||(8242081-8242229)
chr7 (89-257)||(25942402-25942569)
chr7 (89-211)||(10361092-10361209)
chr7 (129-243)||(13932692-13932811)
chr7 (89-255)||(19347881-19348046)
chr7 (89-212)||(45261339-45261456)
chr7 (132-212)||(11910790-11910870)
chr7 (352-395)||(22836604-22836647)
chr7 (118-226)||(297639-297752)
chr7 (142-211)||(34080015-34080083)
[»] chr2 (14 HSPs)
chr2 (89-257)||(3587161-3587329)
chr2 (89-257)||(12569435-12569603)
chr2 (118-212)||(9651046-9651140)
chr2 (89-216)||(3237485-3237612)
chr2 (118-254)||(25325171-25325311)
chr2 (89-243)||(42807958-42808112)
chr2 (132-243)||(11706543-11706659)
chr2 (127-257)||(44088397-44088536)
chr2 (130-243)||(26827427-26827546)
chr2 (89-167)||(4185273-4185351)
chr2 (132-209)||(33907140-33907217)
chr2 (168-243)||(4158670-4158750)
chr2 (214-257)||(4185228-4185271)
chr2 (164-244)||(44088632-44088712)
[»] scaffold0024 (1 HSPs)
scaffold0024 (89-216)||(58202-58329)
[»] scaffold0110 (1 HSPs)
scaffold0110 (89-257)||(49452-49620)
[»] chr8 (16 HSPs)
chr8 (130-243)||(27126598-27126711)
chr8 (89-243)||(2612543-2612697)
chr8 (118-257)||(39584855-39584993)
chr8 (96-207)||(26741263-26741374)
chr8 (89-256)||(37698000-37698162)
chr8 (143-240)||(15870794-15870891)
chr8 (130-257)||(35917711-35917837)
chr8 (127-212)||(18404809-18404894)
chr8 (135-243)||(6837736-6837850)
chr8 (130-210)||(35596385-35596465)
chr8 (132-243)||(44599341-44599457)
chr8 (134-191)||(7990296-7990353)
chr8 (124-193)||(26909929-26909997)
chr8 (157-225)||(41427954-41428022)
chr8 (96-134)||(1386655-1386693)
chr8 (89-117)||(27126706-27126734)
[»] chr6 (10 HSPs)
chr6 (89-216)||(34677095-34677223)
chr6 (130-257)||(30044098-30044230)
chr6 (134-243)||(15707247-15707361)
chr6 (127-259)||(2978549-2978685)
chr6 (118-243)||(34760334-34760464)
chr6 (157-257)||(11545929-11546034)
chr6 (89-243)||(10321386-10321545)
chr6 (96-244)||(32011683-32011826)
chr6 (176-243)||(6862060-6862130)
chr6 (207-243)||(21038801-21038837)
[»] chr5 (9 HSPs)
chr5 (89-243)||(18405696-18405854)
chr5 (135-243)||(28210814-28210927)
chr5 (130-243)||(10371303-10371421)
chr5 (130-212)||(34374658-34374740)
chr5 (89-211)||(35540174-35540291)
chr5 (118-191)||(18256549-18256622)
chr5 (96-133)||(18961414-18961451)
chr5 (96-133)||(18963324-18963361)
chr5 (96-175)||(18720358-18720438)
[»] scaffold0137 (2 HSPs)
scaffold0137 (130-235)||(24262-24362)
scaffold0137 (89-117)||(24357-24385)
[»] scaffold0242 (1 HSPs)
scaffold0242 (152-240)||(3701-3794)
[»] scaffold0125 (1 HSPs)
scaffold0125 (153-215)||(22106-22168)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 89 - 257
Target Start/End: Original strand, 29323269 - 29323437
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29323269 atgggccaatgggccggcccaaagcccagtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccgaaaaagcccgagcgcatt 29323368  T
Q  189 ttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggcccatttttgacagctcta 257  Q
    ||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29323369 tttttattagttttttaggcccggcccaaaaatatgggccaatgggccggcccatttttgacagctcta 29323437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 28991247 - 28991088
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28991247 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccgaaaaagcccgagcgcatt 28991148  T
Q  189 ttttggttagttttttaggcccgg-----cccaaaaatatgggtcaatgggccggcccat 243  Q
    |||| |||||||||||||||||||     |||||||||||||| ||||||||||||||||    
T  28991147 tttttgttagttttttaggcccggcccgacccaaaaatatgggccaatgggccggcccat 28991088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 13159282 - 13159408
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13159282 atgggccaatgggccggcccaaatcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 13159381  T
Q  189 ttttggttagttttttaggcccggccc 215  Q
    |||||||||||||||||||||||||||    
T  13159382 ttttggttagttttttaggcccggccc 13159408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 44906211 - 44906364
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||  |||||| ||| |    
T  44906211 atgggctaatgggccggcccaaagtccggtgggccagcccggcccggcccaacttttgtatggcccaaatgggcttgggccgaaaattcccgagtgca-t 44906309  T
Q  189 ttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44906310 ttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggcccat 44906364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 45200154 - 45200277
Alignment:
Q  92 ggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttt 191  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  45200154 ggccaatgggccggcccaaagcccggtgggccagcccggcccaacccaacttttgtctagcccaaatggacttgggccaaaaaagcccgagcgcattttt 45200253  T
Q  192 tggttagttttttaggcccggccc 215  Q
    ||||||||||||||||||||||||    
T  45200254 tggttagttttttaggcccggccc 45200277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 96 - 243
Target Start/End: Original strand, 31372936 - 31373082
Alignment:
Q  96 aatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggt 195  Q
    |||||||||||||||||| || |||||||| |||||||| |||||||||| | ||||||||||||||||||||| ||||||| |||| ||||||||||||    
T  31372936 aatgggccggcccaaagctcgatgggccagtccggcccgacccaacttttttatggcccaaatgggcttgggccgaaaaagctcgagtgcattttttggt 31373035  T
Q  196 tagttttttaggcccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31373036 tagttttttaggcccggcccaaaaatatggg-caatgggccggcccat 31373082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 89 - 257
Target Start/End: Original strand, 29170461 - 29170629
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| ||| |||||||||||||||||||||| ||     |||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  29170461 atgggctaataggccggcccaaagcccggtggggca-----gcccggcccaacttttgtatggcccaaatgggcttgtgccaaaaaagcccgagtgcatt 29170555  T
Q  189 ttttggttagtttttta-----ggcccggcccaaaaatatgggtcaatgggccggcccatttttgacagctcta 257  Q
    |||||||||||||||||     ||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  29170556 ttttggttagttttttaggcccggcccggcccaaaaatatgggccaatgggccggcccatttttaacagctcta 29170629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 89 - 257
Target Start/End: Original strand, 28986106 - 28986263
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||||||||||||||||||||||||| |||||||||||          ||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  28986106 atgggccaatgggccggcccaaagcccgatgggccagccc----------aacttttgtatggcccaaatgggcttgggccaaaaaagcccgagtgcatt 28986195  T
Q  189 ttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggcccatttttgacagctcta 257  Q
    |||| |||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| |||||||    
T  28986196 ttttcgttagttttttaggcccggccc-aaaatatgggccaatggaccggcccatttttgatagctcta 28986263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 50463200 - 50463318
Alignment:
Q  130 gcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagtttttta-----ggcccggcccaaaaatatg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||    
T  50463200 gcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccggcccaaaaatatg 50463299  T
Q  225 ggtcaatgggccggcccat 243  Q
    || ||||||||||||||||    
T  50463300 ggccaatgggccggcccat 50463318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 18971910 - 18971756
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||     ||||||||| |||||||||||||||| |||||||| |||||||| ||||     
T  18971910 atgggctaatgggccgacccaaagctcggtgggccagcccggccc-----aacttttgtatggcccaaatgggcttaggccaaaacagcccgagtgcata 18971816  T
Q  189 ttttggttagttttttaggcccgg-----cccaaaaatatgggtcaatgggccggcccat 243  Q
    ||||| ||||||||||||||||||     |||||||||||||||||||||||||||||||    
T  18971815 ttttgattagttttttaggcccggaccgacccaaaaatatgggtcaatgggccggcccat 18971756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 26135532 - 26135691
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| |||||||||||| ||||||| |||| |||| |||||||| ||||||||||||  |||||||||||||||||||| |||||||||||   ||||    
T  26135532 atgggctaatgggccggcctaaagcccagtggaccagtccggcccgacccaacttttgtacggcccaaatgggcttgggccgaaaaagcccgatttcatt 26135631  T
Q  189 ttttggttagttttttagg-----cccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||||||||||||||||||     |||| |||||||||||||| ||||||||||||||||    
T  26135632 ttttggttagttttttaggcccgacccgacccaaaaatatgggccaatgggccggcccat 26135691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 96 - 257
Target Start/End: Original strand, 38734008 - 38734166
Alignment:
Q  96 aatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggt 195  Q
    ||||||||||||||||||||||||| ||||||||| || ||||||||||||| ||||||||||||| ||||||  ||||| |||||| || |||||  ||    
T  38734008 aatgggccggcccaaagcccggtggtccagcccggtccagcccaacttttgtatggcccaaatgggtttgggctgaaaaa-cccgagtgccttttt--gt 38734104  T
Q  196 tagttttttaggcccggcccaaaaatatgggtcaatgggccggcccatttttgacagctcta 257  Q
    ||||||||||| ||| | ||||||||||||| |||||||||| |||||||| ||||||||||    
T  38734105 tagttttttagacccagaccaaaaatatgggccaatgggccgtcccattttcgacagctcta 38734166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 45317055 - 45317213
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||||| |||| |||||| |||||  ||||    
T  45317055 atgggctaatgggccggcccaaagcccggtggcccaacccggcccggcccaacttttgtatggcccatatgggcttaggccgaaaaagtccgagtacatt 45317154  T
Q  189 ttttggttagttttttagg-----cccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||| ||||||||||||||     ||||||||||||||||||  |||||||| |||||||    
T  45317155 tttt-gttagttttttaggcccgacccggcccaaaaatatggaccaatgggctggcccat 45317213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 40503843 - 40503972
Alignment:
Q  133 cggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagtttttta-----ggcccggcccaaaaatatgggt 227  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||| ||     |||||||||||||||||||||     
T  40503843 cggcccaacttttgtatggcccaaatgggcttgggccgaaaaagtccgagtgcattttttggttggttttctaggtccggcccggcccaaaaatatgggc 40503942  T
Q  228 caatgggccggcccatttttgacagctcta 257  Q
    ||||||| | ||||||||||||||||||||    
T  40503943 caatgggtcagcccatttttgacagctcta 40503972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 25630977 - 25631118
Alignment:
Q  102 ccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttt 201  Q
    |||||||||||||||||||||||||||     ||||||||||||||  ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||    
T  25630977 ccggcccaaagcccggtgggccagccc-----ggcccaacttttgtaaggcccaaatgggcttgggccaaaaaagcccgagtgca-tttttcgttagttt 25631070  T
Q  202 ttt------aggcccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||       ||||||||||||||||||||| ||||||||||||||||    
T  25631071 ttttaggcccggcccggcccaaaaatatgggccaatgggccggcccat 25631118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 135 - 257
Target Start/End: Complemental strand, 42443961 - 42443834
Alignment:
Q  135 gcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttagg-----cccggcccaaaaatatgggtca 229  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||||     ||||| ||||||| ||||||||    
T  42443961 gcccaacttttgtatggcccaaatgtgcttgggccaaaaaagcccgagtgcatttttggggtagttttttaggcccgacccggtccaaaaacatgggtca 42443862  T
Q  230 atgggccggcccatttttgacagctcta 257  Q
    |||| |||||||||||| ||||||||||    
T  42443861 atggaccggcccattttcgacagctcta 42443834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 211
Target Start/End: Original strand, 46558921 - 46559041
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| | |||||||||||| |||||| | ||||| |||||| |||||    
T  46558921 atgggctaatgggccggcccaaagcccgatgggccagcctggcccggcccaacttttatatggcccaaatggacttgggtcgaaaaaacccgagtgcatt 46559020  T
Q  189 ttttggttagttttttaggcccg 211  Q
    |||  ||||||||||||||||||    
T  46559021 ttt--gttagttttttaggcccg 46559041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 89 - 257
Target Start/End: Original strand, 16341524 - 16341692
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| ||| |||||||||||||| |||||||||||||||| ||     ||||||||| |||||||||||  |||||||| ||||| |||||| ||| |    
T  16341524 atgggctaataggccggcccaaagctcggtgggccagcccgggcc-----aacttttgtatggcccaaatgaacttgggccgaaaaaccccgagtgcagt 16341618  T
Q  189 ttttggttagtttttta-----ggcccggcccaaaaatatgggtcaatgggccggcccatttttgacagctcta 257  Q
    |||||||||||||||||     || |||||||||||| ||||  |||||||| |||||||||||||||||||||    
T  16341619 ttttggttagttttttaggtccggtccggcccaaaaacatggcccaatgggctggcccatttttgacagctcta 16341692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 53302642 - 53302520
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| || |||||||| || ||||||||||||||| ||| || || ||    
T  53302642 atgggccaatgggccggcccaaagcccagtgggccagcccggcccggtcgaactttcgtatggcccaactgagcttgggccaaaaaaacccaagtgc-tt 53302544  T
Q  189 ttttggttagttttttaggcccgg 212  Q
    ||| || |||||||||||||||||    
T  53302543 tttgggctagttttttaggcccgg 53302520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 53303809 - 53303687
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| || |||||||| || ||||||||||||||| ||| || || ||    
T  53303809 atgggccaatgggccggcccaaagcccagtgggccagcccggcccggtcgaactttcgtatggcccaactgagcttgggccaaaaaaacccaagtgc-tt 53303711  T
Q  189 ttttggttagttttttaggcccgg 212  Q
    ||| || |||||||||||||||||    
T  53303710 tttgggctagttttttaggcccgg 53303687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 9145299 - 9145379
Alignment:
Q  135 gcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggccc 215  Q
    ||||||||||||| |||||||||||||| |||||| |||||||| ||| ||||||||||||||||||||||||||||||||    
T  9145299 gcccaacttttgtatggcccaaatgggcctgggccgaaaaagcctgagtgcattttttggttagttttttaggcccggccc 9145379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 151 - 257
Target Start/End: Complemental strand, 24426032 - 24425923
Alignment:
Q  151 gcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggccc-----aaaaatatgggtcaatgggccggcccattt 245  Q
    |||||||| ||||||||||  ||||||||||| |||||||||||||||||||  |||||||||||     ||||||||||| ||||||||||||||||||    
T  24426032 gcccaaattggcttgggccggaaaagcccgagtgcattttttggttagtttt--aggcccggcccgacccaaaaatatgggccaatgggccggcccattt 24425935  T
Q  246 ttgacagctcta 257  Q
    ||||||||||||    
T  24425934 ttgacagctcta 24425923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 130 - 257
Target Start/End: Complemental strand, 42591136 - 42591005
Alignment:
Q  130 gcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagtttttt------aggcccggcccaaaaatat 223  Q
    |||||||||||||||||| ||||||||||||||| ||||| |||||||||||| ||   ||||||||||||||||       |||||| ||||| |||||    
T  42591136 gcccggcccaacttttgtatggcccaaatgggctcgggccgaaaaagcccgagtgc--gttttggttagtttttttaggtccggcccgacccaacaatat 42591039  T
Q  224 gggtcaatgggccggcccatttttgacagctcta 257  Q
    ||| |||||||||||||||||||||||| |||||    
T  42591038 gggccaatgggccggcccatttttgacacctcta 42591005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 33775104 - 33775164
Alignment:
Q  166 ggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccaaaaatatggg 226  Q
    |||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  33775104 ggccgaaaaagcccgagtgcgttttttggttagttttttaggcccggcccaaaaatatggg 33775164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 25630939 - 25630983
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggccc 133  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  25630939 atgggctaatgggccggcccaaagcccggtgggccagcccggccc 25630983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 55140132 - 55140075
Alignment:
Q  130 gcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||||||||||||| || ||||||||||||||||||||| |||||||||||| |||||    
T  55140132 gcccggcccaacttt-gtatggcccaaatgggcttgggccgaaaaagcccgagtgcatt 55140075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 33775050 - 33775103
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgt 147  Q
    |||||| |||||||||||||||||||||||||||||     ||||||||||||||||||    
T  33775050 atgggctaatgggccggcccaaagcccggtgggcca-----gcccggcccaacttttgt 33775103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 24426072 - 24426032
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccg 129  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  24426072 atgggcaaatgggccggcccaaagtccggtgggccagcccg 24426032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 7956107 - 7956166
Alignment:
Q  199 ttttttaggcccggcccaaaaatatgggtcaatgggccggcccatttttgacagctctaa 258  Q
    ||||| ||||||| ||||||||  |||| |||||||||| ||| ||||||||||||||||    
T  7956107 tttttgaggcccgacccaaaaaattgggccaatgggccgccccgtttttgacagctctaa 7956166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 9145390 - 9145418
Alignment:
Q  229 aatgggccggcccatttttgacagctcta 257  Q
    |||||||||||||||||||||||||||||    
T  9145390 aatgggccggcccatttttgacagctcta 9145418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 5154119 - 5154273
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5154119 atgggtcaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccgaaaaagcccgagcgcatt 5154218  T
Q  189 ttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5154219 tttttgttagttttttaggcccggcccaaaaatatgggccaatgggccggcccat 5154273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 26519876 - 26520035
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26519876 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccgaaaaagcccgagcgcatt 26519975  T
Q  189 ttttggttagtttttta-----ggcccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||||||||||||||||     ||||||||||||||||||||| ||||||||||||||||    
T  26519976 ttttggttagttttttaggcccggcccggcccaaaaatatgggccaatgggccggcccat 26520035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 89 - 257
Target Start/End: Original strand, 31198783 - 31198951
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||||||||||||| | ||||||||||| |||||||||||||||  |||||||||| | ||||||||||||||||||||| ||||| |||||| |||||    
T  31198783 atgggccaatgggccaggccaaagcccggcgggccagcccggcccaacccaacttttttatggcccaaatgggcttgggccgaaaaaacccgagtgcatt 31198882  T
Q  189 ttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggcccatttttgacagctcta 257  Q
    |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  31198883 tttttgttagttttttaggcccggcccaaaaatatgggccaatgtgccggcccatttttgacagctcta 31198951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 29579713 - 29579554
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  29579713 atgggccaatgggccggcccaaagcccggtgggccagccccgcccggcccaacttttgtctggcccaaatgggcttgggccgaaaaagcccgagcacatt 29579614  T
Q  189 ttttggttagttttttaggccc-----ggcccaaaaatatgggtcaatgggccggcccat 243  Q
    ||||| ||||||||||||||||     |||||||||||||||  ||||||||||||||||    
T  29579613 ttttgcttagttttttaggcccggcctggcccaaaaatatggcccaatgggccggcccat 29579554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 8223158 - 8223311
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||  ||||||||||||| ||||| ||||||||||||||| ||||||||| || || ||    
T  8223158 atgggctaatgggccggcccaaagctcggtgggccagcctggcctagcccaacttttgtatggccaaaatgggcttgggccgaaaaagcccaagtgcgtt 8223257  T
Q  189 ttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  8223258 tttt-gttagttttttaggcccggcccaaaaatatgggccaatgtgccggcccat 8223311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 35825503 - 35825387
Alignment:
Q  132 ccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccg-----gcccaaaaatatggg 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||    
T  35825503 ccggccctacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccggcccaaaaatatggg 35825404  T
Q  227 tcaatgggccggcccat 243  Q
     ||||||||||||||||    
T  35825403 ccaatgggccggcccat 35825387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 89 - 251
Target Start/End: Original strand, 21070062 - 21070223
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| |||||||| ||||||||||||||||||||||||| |||     |||||| || ||||||||||||||||||||  |||||||||| | |||||    
T  21070062 atgggctaatgggccagcccaaagcccggtgggccagcccgcccc-----aacttt-gtatggcccaaatgggcttgggctgaaaaagcccgggtgcatt 21070155  T
Q  189 ttttggttagttttttaggcccggcc-----caaaaatatgggtcaatgggccggcccatttttgaca 251  Q
    ||||| ||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||    
T  21070156 ttttgattagttttttaggcccggcccgactcaaaaatatgggtcaatgggccgacccatttttgaca 21070223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 44745703 - 44745825
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| ||||||||||||||||| |||||||||||| ||| | |     ||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  44745703 atgggctaatgggccggcccaaagtccggtgggccagtccgactc-----aacttttgtatggcccaaatgggcttgggccgaaaaagcccgagtgcatt 44745797  T
Q  189 ttttggttagttttttaggcccggccca 216  Q
    ||||||||||||||||||||||||||||    
T  44745798 ttttggttagttttttaggcccggccca 44745825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 48814595 - 48814705
Alignment:
Q  132 ccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccaaaaatatgggtcaat 231  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||||||| || | ||    
T  48814595 ccggcccaacttttgtatggcccaaatgggcttgggccgaaaaagcccgagtgca-tttttggttagttttataggcccggcccaaaaatataggcccat 48814693  T
Q  232 gggccggcccat 243  Q
    ||||||||||||    
T  48814694 gggccggcccat 48814705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 50579293 - 50579409
Alignment:
Q  132 ccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggc-----ccggcccaaaaatatggg 226  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||  ||||||||||||||     ||||||||||||||||||    
T  50579293 ccggcccaacttttgtatggcccaaatgggcttgggccaaaaaaacccgagtgcatttttttattagttttttaggcccgatccggcccaaaaatatggg 50579392  T
Q  227 tcaatgggccggcccat 243  Q
     ||||||||||||||||    
T  50579393 ccaatgggccggcccat 50579409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 26003580 - 26003685
Alignment:
Q  97 atgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggtt 196  Q
    ||||||||||||||||||||||||||||||||          || |||||| ||| |||||||||||||||||||||||||||||| ||||||||| |||    
T  26003580 atgggccggcccaaagcccggtgggccagccc----------aatttttgtatggtccaaatgggcttgggccaaaaaagcccgagtgcattttttcgtt 26003669  T
Q  197 agttttttaggcccgg 212  Q
    ||||||||||||||||    
T  26003670 agttttttaggcccgg 26003685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 34968311 - 34968391
Alignment:
Q  136 cccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggccca 216  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| ||||    
T  34968311 cccaacttttgtatggcccaaatgggcttgggccgaaaaagcccgagtgcatttttttgttagttttttaggcccgaccca 34968391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 89 - 207
Target Start/End: Complemental strand, 36368759 - 36368646
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||     ||| ||||| ||||||||||||||||||||| ||||| |||  | |||||    
T  36368759 atgggctaatgggccggcccaaagcccgatgggccagcccggccc-----aacctttgtatggcccaaatgggcttgggccgaaaaaacccaggtgcatt 36368665  T
Q  189 ttttggttagttttttagg 207  Q
    |||| ||||||||||||||    
T  36368664 tttttgttagttttttagg 36368646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 4447358 - 4447243
Alignment:
Q  130 gcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttagg-----cccggcccaaaaatatg 224  Q
    ||||||||||||||||   | ||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||     |||| ||||||||||||    
T  4447358 gcccggcccaactttt---tagcccaaatgggcttgggtcgaaaaagcccgagtgcattttttggttagttttttaggcccgtcccgacccaaaaatatg 4447262  T
Q  225 ggtcaatgggccggcccat 243  Q
    || ||||| ||||||||||    
T  4447261 ggccaatgagccggcccat 4447243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 136 - 257
Target Start/End: Original strand, 13982556 - 13982680
Alignment:
Q  136 cccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccg----gcccaaaaatatgggtcaat 231  Q
    |||||||||||| ||||||||||| || |||||  |||| | ||||| | ||||||||||||||||||||||||||    | ||||||||||||| ||||    
T  13982556 cccaacttttgtatggcccaaatgagcatgggctgaaaa-gtccgagtgtattttttggttagttttttaggcccgaactgtccaaaaatatgggccaat 13982654  T
Q  232 gggccggcccatttttgacagctcta 257  Q
    ||||| ||||||||||||||||||||    
T  13982655 gggccagcccatttttgacagctcta 13982680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 7025938 - 7025850
Alignment:
Q  127 ccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggccc 215  Q
    ||||||||| ||||||||||| ||| |||||||| |||||||| |||||||| ||| ||||||||| ||| ||||||||||||||||||    
T  7025938 ccggcccggtccaacttttgtatgggccaaatggacttgggccgaaaaagcctgagtgcatttttttgttcgttttttaggcccggccc 7025850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 243
Target Start/End: Original strand, 38614391 - 38614482
Alignment:
Q  152 cccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||||||| |||||||||  || |||||||| |||||||||||||||||||||| ||||| |||||||||||||| |||| | |||||||||    
T  38614391 cccaaatgagcttgggccgtaagagcccgagtgcattttttggttagttttttaagcccgacccaaaaatatgggccaatagaccggcccat 38614482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 24672687 - 24672734
Alignment:
Q  166 ggccaaaaaagcccgagcgcattttttggttagttttttaggcccggc 213  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  24672687 ggccaaaaaagcccgagtgcatttttgggttagttttttaggcccggc 24672734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 10923875 - 10923818
Alignment:
Q  157 atgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggccc 215  Q
    ||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||    
T  10923875 atgggcttgggccgaaaaagcccaagtgcattttt-ggttagttttttaggcccggccc 10923818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 37573503 - 37573425
Alignment:
Q  96 aatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaa 175  Q
    ||||| ||||||||||||||| |||  |||||||||||  ||||  |||||| ||| ||||||||| |||||||||||||    
T  37573503 aatggaccggcccaaagcccgatggaacagcccggcccaacccattttttgtatgg-ccaaatgggtttgggccaaaaaa 37573425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 1356888 - 1356822
Alignment:
Q  91 gggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaa 157  Q
    |||| ||||||||| ||||||||||| |||||||| |||| ||| ||||||||| || ||| |||||    
T  1356888 gggctaatgggccgtcccaaagcccgatgggccagtccggtccgacccaactttcgtatgggccaaa 1356822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 1356824 - 1356731
Alignment:
Q  171 aaaaagcccgagcgcattttttggttagttttttagg-----cccggcccaaaaatatgggtcaatgggccggcccatttttgacagctctaat 259  Q
    |||||||||||| |||||||| || |||||||| |||     ||||||||||||  ||||| |||| || ||| |||||||||||| |||||||    
T  1356824 aaaaagcccgagtgcatttttgggctagtttttcaggcccgacccggcccaaaagcatgggccaataggtcggtccatttttgacaactctaat 1356731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 31846050 - 31845891
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31846050 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccgaaaaagcccgagcgcatt 31845951  T
Q  189 ttttggttagttttttaggcccgg-----cccaaaaatatgggtcaatgggccggcccat 243  Q
    |||| |||||||||||||||||||     ||||||||||||||||||||||| |||||||    
T  31845950 tttttgttagttttttaggcccggcccgacccaaaaatatgggtcaatgggctggcccat 31845891  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 89 - 257
Target Start/End: Complemental strand, 28185219 - 28185051
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||||||||||||||||||||||||||||||||||| || |||     ||||||| | ||||||||||||||||||||| |||||||||||| |||||    
T  28185219 atgggccaatgggccggcccaaagcccggtgggccagctcgaccc-----aacttttttatggcccaaatgggcttgggccgaaaaagcccgagtgcatt 28185125  T
Q  189 ttttggttagttttttaggc-----ccggcccaaaaatatgggtcaatgggccggcccatttttgacagctcta 257  Q
    ||||||||||||||||||||     |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28185124 ttttggttagttttttaggcccggtccggcccaaaaatatgggccaatgggccggcccatttttgacagctcta 28185051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 49269214 - 49269368
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  49269214 atgggccaatgggccggcccaaagcccggtgggccagccc-----ggcccaacttttgtctggcccaaatgggcttgggccgaaaaagcccgagcacatt 49269308  T
Q  189 ttttggttagttttttagg-----cccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||||||||||||||||||     |||||| |||||||||||| |||||| |||||||||    
T  49269309 ttttggttagttttttaggcccaacccggctcaaaaatatgggccaatggaccggcccat 49269368  T

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Target: chr4; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 13391255 - 13391106
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||||||||||||||||||||||| ||||||||     |||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  13391255 atgggccaatgggccggcccaaagcctggtgggcc-----ggcccggcccaatttttgtatggcccaaatgggcttgggccaaaaaagcccgagtgcatt 13391161  T
Q  189 ttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    ||||  |||||||||||||||||||||||||||||||| |||| ||| |||||||    
T  13391160 ttttcattagttttttaggcccggcccaaaaatatgggccaataggctggcccat 13391106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 1763844 - 1763995
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||||||||||||||||| ||| |||||||||||| || ||||||||||||||||| | ||||||||||||||||||||| |||||||||||| ||| |    
T  1763844 atgggccaatgggccggccaaaa-cccggtgggcca-ccaggcccggcccaacttttttatggcccaaatgggcttgggccgaaaaagcccgagtgca-t 1763940  T
Q  189 ttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||||||||||||||||| |||||||||||||||||||  |||||||||||||||    
T  1763941 ttttggttagttttttagtcccggcccaaaaatatgggctaatgggccggcccat 1763995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 89 - 257
Target Start/End: Original strand, 28972951 - 28973119
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| |||||||||||||||||||||||||| ||     ||||| |||||||||||| ||||||||||||||||||||| ||||| |||||| |||||    
T  28972951 atgggctaatgggccggcccaaagcccggtgggtca-----gcccgacccaacttttgtatggcccaaatgggcttgggccgaaaaaccccgagtgcatt 28973045  T
Q  189 ttttggttagtttttta-----ggcccggcccaaaaatatgggtcaatgggccggcccatttttgacagctcta 257  Q
    |||||||||||||||||     |||||||| |||||||||||| |||| |||||||||||||||||||||||||    
T  28973046 ttttggttagttttttaggtccggcccggctcaaaaatatgggccaataggccggcccatttttgacagctcta 28973119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 48080664 - 48080553
Alignment:
Q  132 ccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccaaaaatatgggtcaat 231  Q
    |||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  48080664 ccggcccaacttttgtctagcccaaatgggcttgggctgaaaaagcccgagcgcattttttggttagttttttaggcccgacccaaaaatatgggccaat 48080565  T
Q  232 gggccggcccat 243  Q
    ||||||||||||    
T  48080564 gggccggcccat 48080553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 55826067 - 55826192
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||    
T  55826067 atgggtcaatgggccggcccaaagctcggtgggccagcccg-cccggcccaacttttttatggcccaaatgggcttgggccgaaaaagcccgagtgcatt 55826165  T
Q  189 ttttggttagttttttaggcccggccc 215  Q
    ||||||||||||||||||| |||||||    
T  55826166 ttttggttagttttttagggccggccc 55826192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 89 - 257
Target Start/End: Complemental strand, 6377210 - 6377043
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||||||||||||||||||||||||| ||||| |     |||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||    
T  6377210 atgggccaatgggccggcccaaagcccgttgggcta-----gcccggcccaacttttttatggcccaaatgggcttgggccgaaaaagcccgagtgcatt 6377116  T
Q  189 ttttggttagtttttta-----ggcccggcccaaaaatatgggtcaatgggccggcccatttttgacagctcta 257  Q
    |||| ||||||||||||     ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  6377115 tttt-gttagttttttaggcccggcccggcccaaaaatatgggccaatgagccggtccatttttgacagctcta 6377043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 7878580 - 7878691
Alignment:
Q  132 ccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccaaaaatatgggtcaat 231  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||    
T  7878580 ccggcccaacttttgtatggcccaaatgggcttgggccgaaaaagcccgagttcattttttggttagttttttaggcccggcccaaaaatatgggccaat 7878679  T
Q  232 gggccggcccat 243  Q
    ||||| ||||||    
T  7878680 gggccagcccat 7878691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 55762267 - 55762384
Alignment:
Q  97 atgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggtt 196  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||||||||||    
T  55762267 atgggccggcccaaagctcggtgggccagcccg-cccggcccaacttttttatggcccaaatgggcttgggccgaaaaagcccgagtgcattttttggtt 55762365  T
Q  197 agttttttaggcccggccc 215  Q
    ||||||||||| |||||||    
T  55762366 agttttttagggccggccc 55762384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 34487591 - 34487442
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||||||||||||||||||||| |||||||||| ||||          ||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  34487591 atgggccaatgggccggcccaaagtccggtgggcccgccc----------aacttttgtatggcccaaatgggcttgggccaaaaaagcccgagtgcatt 34487502  T
Q  189 ttttggttagttttttaggcccggc-----ccaaaaatatgggtcaatgggccggcccat 243  Q
    |||| ||||||||||||||||||||     ||||||||||||| ||||||||||||||||    
T  34487501 ttttcgttagttttttaggcccggcccggtccaaaaatatgggccaatgggccggcccat 34487442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 51549604 - 51549455
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||||||||| ||||||||||||||||||||||     || ||| |||||||||||| ||||||||||||| |||||||  ||||||||  | |||||    
T  51549604 atgggccaatggaccggcccaaagcccggtgggcc-----gggccgacccaacttttgtatggcccaaatgggattgggccgtaaaagcccaggtgcatt 51549510  T
Q  189 ttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||| |||||||||||||||||| |||||||||||||| |||||| |||||||||    
T  51549509 tttttgttagttttttaggcccgacccaaaaatatgggccaatggaccggcccat 51549455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 7069468 - 7069315
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||||     ||||||| | ||||||||||||||||||||| |||||||||||| ||| |    
T  7069468 atgggccaatgtgccggcccaaagcccggtggcccagctcggccc-----aacttttttatggcccaaatgggcttgggccgaaaaagcccgagtgca-t 7069375  T
Q  189 ttttggttagttttttagg-----cccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||||||||||||||||||     ||||||||||||||||||| |||| |||| ||||||    
T  7069374 ttttggttagttttttaggcccgacccggcccaaaaatatgggccaattggccagcccat 7069315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 11509244 - 11509159
Alignment:
Q  130 gcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggccc 215  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| ||||    
T  11509244 gcccggcccaacttttgtatggcccaaatgggcttgggccaaaaaagcccgagtgcgttttttagttagttttttaggcccagccc 11509159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 41235740 - 41235585
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggcc-aaaaaagcccgagcgcat 187  Q
    |||||| ||||||||||||||||| || |||| ||||||||||||     ||||||||| |||||||||||||||||||||  ||||| ||||||  |||    
T  41235740 atgggctaatgggccggcccaaagtccagtggaccagcccggccc-----aacttttgtatggcccaaatgggcttgggccggaaaaaacccgagtacat 41235646  T
Q  188 tttttggttagttttttagg-----cccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    ||||| ||||||||||||||     ||||||||||||||||| | ||||||||||||||||    
T  41235645 ttttttgttagttttttaggcccaacccggcccaaaaatatgagccaatgggccggcccat 41235585  T

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Target: chr4; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 42384179 - 42384292
Alignment:
Q  96 aatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggt 195  Q
    ||||||||| ||||||||||||||||||||||| | ||| | |||||||||| |||||||||||| |||||  | |||||||||||| ||||||| ||||    
T  42384179 aatgggccgacccaaagcccggtgggccagcccagtccgccacaacttttgtatggcccaaatggacttggatcgaaaaagcccgagtgcattttgtggt 42384278  T
Q  196 tagttttttaggcc 209  Q
    |||||| |||||||    
T  42384279 tagtttcttaggcc 42384292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 124 - 251
Target Start/End: Complemental strand, 18732684 - 18732556
Alignment:
Q  124 agcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccaaaaatat 223  Q
    |||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||  | |||||||||||  |||||||| |||| | |||||||||    
T  18732684 agcccggcccagcccaatttttgtatggcccaaatgggcttgggccgaaaaagcccgaatgtattttttggtttattttttagacccgacacaaaaatat 18732585  T
Q  224 gggtcaatg-ggccggcccatttttgaca 251  Q
    ||| | ||| | ||| |||||||||||||    
T  18732584 gggcccatgagcccgacccatttttgaca 18732556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 32352524 - 32352633
Alignment:
Q  153 ccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggccca-tttttgaca 251  Q
    ||||||||||||||||||||| |||||||| |  |||||||| | ||||||||||||| | |||||| ||||||  ||||||||| |||| ||||| |||    
T  32352524 ccaaatgggcttgggccaaaatagcccgagtgtgttttttggcttgttttttaggccctgtccaaaattatgggctaatgggccgacccatttttttaca 32352623  T
Q  252 gctctaatca 261  Q
    ||||||||||    
T  32352624 gctctaatca 32352633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 47461866 - 47461789
Alignment:
Q  132 ccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcc 209  Q
    ||||||||| |||||| ||| |||||||||||||||||||||||||||||| || ||||| |  ||||||||||||||    
T  47461866 ccggcccaaattttgtatggaccaaatgggcttgggccaaaaaagcccgagtgcgtttttggactagttttttaggcc 47461789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 36505538 - 36505653
Alignment:
Q  135 gcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttgg-ttagtttttt-agg-----cccggcccaaaaatatgggt 227  Q
    ||||||||||||| |||  |||||||||||||| |||||||||||||| ||||||||||| |||||||||| |||     |||| ||||||||||||| |    
T  36505538 gcccaacttttgtatggatcaaatgggcttgggtcaaaaaagcccgagtgcattttttgggttagtttttttaggtccagcccgacccaaaaatatggat 36505637  T
Q  228 caatgggccggcccat 243  Q
     |||||||||| ||||    
T  36505638 aaatgggccggaccat 36505653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 13051595 - 13051674
Alignment:
Q  164 tgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggcccatt 244  Q
    |||||||||||||||| |  |||||||| || ||| |||||||||||| ||| ||||||| ||| ||| ||||||||||||    
T  13051595 tgggccaaaaaagccctattgcatttttaggctagctttttaggcccgaccc-aaaatataggttaataggccggcccatt 13051674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 48847703 - 48847743
Alignment:
Q  96 aatgggccggcccaaagcccggtgggccagcccggcccggc 136  Q
    ||||||||||||| ||||||| |||||| ||||||||||||    
T  48847703 aatgggccggcccgaagcccgatgggccggcccggcccggc 48847743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 89 - 215
Target Start/End: Complemental strand, 147706 - 147580
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  147706 atgggccaatgggccggcccaaatcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 147607  T
Q  189 ttttggttagttttttaggcccggccc 215  Q
    |||||||||||||||||||||||||||    
T  147606 ttttggttagttttttaggcccggccc 147580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 89 - 258
Target Start/End: Complemental strand, 32455567 - 32455393
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| |||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||||||||||||||||||  |||||  ||||| |||||    
T  32455567 atgggctaatgggccggcccaaagcccagtgggccagccccgcccgacccaacttttgtatggcccaaatgggcttgggctgaaaaaatccgagtgcatt 32455468  T
Q  189 ttttggttagttttttaggcccggcc-----caaaaatatgggtcaatgggccggcccatttttgacagctctaa 258  Q
    |||| ||||||||||||||||||| |     ||||||||||||||||||||||||||||||||||||||||||||    
T  32455467 tttttgttagttttttaggcccggtccggttcaaaaatatgggtcaatgggccggcccatttttgacagctctaa 32455393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 97 - 243
Target Start/End: Complemental strand, 29646748 - 29646597
Alignment:
Q  97 atgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggtt 196  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||||||| |||    
T  29646748 atgggccggcccaaagcctgctgggccagcccggcccggcccaacttttttatggcccaaatgggcttgggccgaaaaagcccgagtgcatttttttgtt 29646649  T
Q  197 agttttttaggcccg-----gcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||||||||||||||     ||||||||||||||| |||||| |||||||||    
T  29646648 agttttttaggcccggcccggcccaaaaatatgggccaatggaccggcccat 29646597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 97 - 258
Target Start/End: Original strand, 46510590 - 46510756
Alignment:
Q  97 atgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggtt 196  Q
    |||||||||| ||||||||| | | |||||||||||||  ||||||||||| ||||||||||||||||||  | ||||| |||||| |||||||||||||    
T  46510590 atgggccggcacaaagcccgattgaccagcccggcccgatccaacttttgtatggcccaaatgggcttggatcgaaaaatcccgagtgcattttttggtt 46510689  T
Q  197 agtttttta-----ggcccggcccaaaaatatgggtcaatgggccggcccatttttgacagctctaa 258  Q
    |||||||||     ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46510690 agttttttaggcctggcccggcctaaaaatatgggtcaatgggccggcccatttttgacagctctaa 46510756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 8242229 - 8242081
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||     ||||||||  |||||||||||||||||||||||||||||||||| ||| |    
T  8242229 atgggccaatgggccggtccaaagcccgttgggccagcccggccc-----aacttttgaatggcccaaatgggcttgggccaaaaaagcccgagtgca-t 8242136  T
Q  189 ttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||| |||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  8242135 ttttcgttagttttttaggcccgacccaaaactatgggccaatgggccggcccat 8242081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 89 - 257
Target Start/End: Complemental strand, 25942569 - 25942402
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| |||||||||||||||||||| ||||||||     | || ||||||||||||| || ||||||||||||||||||||||||||||||| |||||    
T  25942569 atgggctaatgggccggcccaaagcccagtgggcca-----ggccagcccaacttttgtatgccccaaatgggcttgggccaaaaaagcccgagtgcatt 25942475  T
Q  189 ttttggttagttttttagg-----cccggcccaaaaatatgggtcaatgggccggcccatttttgacagctcta 257  Q
    |||| ||||||||||||||     ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  25942474 tttt-gttagttttttaggcccgacccggcccaaaaatatgggtcaatgggccggtccattttttacagctcta 25942402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 10361209 - 10361092
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| |||||||||||||||||||||||||||||||||||||      ||||||||| ||||||||||||||||||||| | |||||||| | |||||    
T  10361209 atgggctaatgggccggcccaaagcccggtgggccagcccggcct-----aacttttgtatggcccaaatgggcttgggccgacaaagcccgggtgcatt 10361115  T
Q  189 ttttggttagttttttaggcccg 211  Q
    |||||||||||||||||||||||    
T  10361114 ttttggttagttttttaggcccg 10361092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 129 - 243
Target Start/End: Original strand, 13932692 - 13932811
Alignment:
Q  129 ggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggc-----ccaaaaatat 223  Q
    ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||     ||||||||||    
T  13932692 ggcccggaccaacttttgtatggcccaaatgggcttgggccgaaaaagcccgagtgcattttttagttagttttttaggcccggcccggtccaaaaatat 13932791  T
Q  224 gggtcaatgggccggcccat 243  Q
     || ||||||||||||||||    
T  13932792 tggccaatgggccggcccat 13932811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 255
Target Start/End: Original strand, 19347881 - 19348046
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| |||||||||||| |||||||||||| |||      ||||||||||||||||| |||||||||||||||| |||| ||||||||||||  ||||    
T  19347881 atgggctaatgggccggcctaaagcccggtggacca-----acccggcccaacttttgtatggcccaaatgggcttaggccgaaaaagcccgagtacatt 19347975  T
Q  189 ttttggttagtttttta-----ggcccggcccaaaaatatgggtcaatgggccggcccatttttgacagctc 255  Q
    |||| ||||||||||||     ||||||||| ||||||||||| | || |||||||||||||||||||||||    
T  19347976 tttt-gttagttttttaggtccggcccggcctaaaaatatgggccgataggccggcccatttttgacagctc 19348046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 45261456 - 45261339
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||||||||||||||||| ||||||||||||| ||     | |||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||    
T  45261456 atgggccaatgggccggcc-aaagcccggtgggtca-----gtccggcccaacttttgtatggcccaaataggcttgggccaaaaaagcccgagtgcatt 45261363  T
Q  189 ttttggttagttttttaggcccgg 212  Q
    |||| |||||||||||||||||||    
T  45261362 ttttcgttagttttttaggcccgg 45261339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 11910870 - 11910790
Alignment:
Q  132 ccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccgg 212  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||    
T  11910870 ccggcccaacttttgtatggcccaaatgggcttgggccgaaaaaacccgagtgcattttttggttagttttttaggcccgg 11910790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 395
Target Start/End: Original strand, 22836604 - 22836647
Alignment:
Q  352 catcttccctccggtgtgccactaccaataggttcatctcactc 395  Q
    ||||||||||||||||||||||||||||||||||  ||||||||    
T  22836604 catcttccctccggtgtgccactaccaataggtttgtctcactc 22836647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 297639 - 297752
Alignment:
Q  118 tgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccg-----g 212  Q
    |||||| ||||||||||  |||| | |||| ||| ||| || |||||||||||||||||| |||| |  ||||| || ||||||||||||||||     |    
T  297639 tgggccggcccggcccgatccaattattgtatgggccagataggcttgggccaaaaaagctcgagtgtgtttttgggctagttttttaggcccgaccggg 297738  T
Q  213 cccaaaaatatggg 226  Q
    ||||||||||||||    
T  297739 cccaaaaatatggg 297752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 34080083 - 34080015
Alignment:
Q  142 ttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccg 211  Q
    |||||| ||| ||| ||||| |||||||||||| |||| || |||||||| || ||||||||||||||||    
T  34080083 ttttgtatgggccacatgggtttgggccaaaaa-gcccaagtgcatttttgggctagttttttaggcccg 34080015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 89 - 257
Target Start/End: Complemental strand, 3587329 - 3587161
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| |||||||| ||||||||||||||||||||||||| |||     ||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  3587329 atgggctaatgggccagcccaaagcccggtgggccagcccgaccc-----aacttttgtatggcccaaatgggcttgggccaaaaaagcccgagtgcatt 3587235  T
Q  189 ttttggttagtttttt-----aggcccggcccaaaaatatgggtcaatgggccggcccatttttgacagctcta 257  Q
    ||||||||||||||||      |||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  3587234 ttttggttagtttttttggcccggcccggcccaaaaatatcggccaatgggccggcccatttttgacagctcta 3587161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 89 - 257
Target Start/End: Original strand, 12569435 - 12569603
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||||||||  ||||||||| | |||||    
T  12569435 atgggctaatgggccggcccaaagcccggtgggccagcccggcccgacctaaattttgtatggcccaaatgggcttgggcc-gaaaagcccgggtgcatt 12569533  T
Q  189 ttttggttagttttttaggcccggcccaaaaatatgggtcaatg-ggccggcccatttttgacagctcta 257  Q
    |||| |||||||||||||| | |||||||||||||||| | ||| | ||||||||||||||||| |||||    
T  12569534 tttttgttagttttttaggtctggcccaaaaatatgggcccatgagcccggcccatttttgacacctcta 12569603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 9651046 - 9651140
Alignment:
Q  118 tgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccgg 212  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  9651046 tgggccagcccggcccggcccaacttttttatggcccaaatgggcttgggccgaaaaagcccgagtgcattttttggttagttttttaggcccgg 9651140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 3237485 - 3237612
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| ||||||||| |||||||  |||| ||||||||||||||| |||||||||||| |||||||| |||||||| ||| |||||||||||| |||||    
T  3237485 atgggctaatgggccgacccaaagttcggttggccagcccggcccgacccaacttttgtatggcccaagtgggcttgagccgaaaaagcccgagtgcatt 3237584  T
Q  189 ttttggttagttttttaggcccggccca 216  Q
    ||||| ||||||||||||  ||||||||    
T  3237585 ttttgtttagttttttagaaccggccca 3237612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 118 - 254
Target Start/End: Original strand, 25325171 - 25325311
Alignment:
Q  118 tgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggccc-- 215  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||  ||||||||||||||||||| ||      
T  25325171 tgggccagcccggcccgccccaacttttgtatggcccaaatgggcttgggtcaaaaaagcccgagtgcattttt--gttagttttttaggcccggtccgg 25325268  T
Q  216 ---aaaaatatgggtcaatgggcc-ggcccatttttgacagct 254  Q
       ||||||||||| | ||| ||| ||||||||||||||||||    
T  25325269 cctaaaaatatgggcccatgagcccggcccatttttgacagct 25325311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 42808112 - 42807958
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggcc-aaaaaagcccgagcgcat 187  Q
    |||||| |||||||||||||||||||||||||||||     | | |||||||||||||| |||||||||||||||| | || ||||||||||||| ||||    
T  42808112 atgggctaatgggccggcccaaagcccggtgggcca-----ggctggcccaacttttgtatggcccaaatgggcttagaccgaaaaaagcccgagtgcat 42808018  T
Q  188 tttttggttagttttttag----gcccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||||||||||||||||||    | ||||||||||||||| || |||||||||| |||||    
T  42808017 tttttggttagttttttaggtccgtccggcccaaaaatataggccaatgggccgacccat 42807958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 11706543 - 11706659
Alignment:
Q  132 ccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcc-----cggcccaaaaatatggg 226  Q
    |||| |||| |||||| ||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||     ||||||||||| |||||    
T  11706543 ccgggccaaattttgtatggcccaaatgagcttgggccaaaaaaccccgagtgcattttttggttagttttttagacccggttcggcccaaaaacatggg 11706642  T
Q  227 tcaatgggccggcccat 243  Q
    |||||||  ||||||||    
T  11706643 tcaatggatcggcccat 11706659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 44088397 - 44088536
Alignment:
Q  127 ccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagc---ccgagcgcattttttggttagttttttag-----gcccggcccaaa 218  Q
    ||||||||||||||||||||| |  || |||||||||||||||||||||     ||||| |||||||| || |||||||||||     ||||||||||||    
T  44088397 ccggcccggcccaacttttgtataaccaaaatgggcttgggccaaaaaaaaaaaccgagtgcatttttgggctagttttttagacccggcccggcccaaa 44088496  T
Q  219 aatatgggtcaatgggc-cggcccatttttgacagctcta 257  Q
    |||||||| |||||||| || |||||||||||||||||||    
T  44088497 aatatgggccaatgggctcgacccatttttgacagctcta 44088536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 26827427 - 26827546
Alignment:
Q  130 gcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattt-tttggttagttttttaggc-----ccggcccaaaaatat 223  Q
    ||||||||||| |||||| ||||||||||| ||||||||  ||||| |||||| |||||| |||||||||||||||||||     |||||||||||| ||    
T  26827427 gcccggcccaaattttgtatggcccaaatgagcttgggctgaaaaaccccgagtgcatttatttggttagttttttaggcccggtccggcccaaaaacat 26827526  T
Q  224 gggtcaatgggccggcccat 243  Q
     || ||||||||||||||||    
T  26827527 tggccaatgggccggcccat 26827546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 4185351 - 4185273
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttggg 167  Q
    |||||| |||||||||| ||||||||||||| |||| ||||| |||||||||||||||| |||||||||||| ||||||    
T  4185351 atgggctaatgggccggtccaaagcccggtgagccaacccggtccggcccaacttttgtatggcccaaatggacttggg 4185273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 33907140 - 33907217
Alignment:
Q  132 ccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcc 209  Q
    ||||||||| |||||| ||||||||||| ||||||||  ||||| |||||| ||||||||||||||||||||||||||    
T  33907140 ccggcccaaattttgtatggcccaaatgagcttgggcagaaaaaccccgagtgcattttttggttagttttttaggcc 33907217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 4158750 - 4158670
Alignment:
Q  168 ccaaaaaagcccgagcgcattttttggttagttttttaggcccg-----gcccaaaaatatgggtcaatgggccggcccat 243  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||     ||||||||||||||| ||||||||||||||||    
T  4158750 ccaaaaaagcccgagtgcattttttcgttagttttttaggcccggcccggcccaaaaatatgggccaatgggccggcccat 4158670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 4185271 - 4185228
Alignment:
Q  214 ccaaaaatatgggtcaatgggccggcccatttttgacagctcta 257  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  4185271 ccaaaaatatggatcaatgggccggcccatttttgacagctcta 4185228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 44088712 - 44088632
Alignment:
Q  164 tgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggcccatt 244  Q
    |||||||||||||||| || |  ||||  || |||||||| |||||| |||||||| | |||  |||||||||||||||||    
T  44088712 tgggccaaaaaagcccaagtgtgttttggggctagtttttgaggcccagcccaaaattgtggaccaatgggccggcccatt 44088632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 58329 - 58202
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  58329 atgggctaatgggccggcccaaagcccggtgggccagcccgacccggcccaacttttgtatggcccaaatgggcttgggccgaaaaagcccgagtgcatt 58230  T
Q  189 ttttggttagttttttaggcccggccca 216  Q
    |||| ||||||||| |||||||||||||    
T  58229 tttttgttagttttctaggcccggccca 58202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 89 - 257
Target Start/End: Complemental strand, 49620 - 49452
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| |||||||||||||||||||||||||| ||     ||||| |||||||||||| ||||||||||||||||||||| ||||| |||||| |||||    
T  49620 atgggctaatgggccggcccaaagcccggtgggtca-----gcccgacccaacttttgtatggcccaaatgggcttgggccgaaaaaccccgagtgcatt 49526  T
Q  189 ttttggttagttttttagg-----cccggcccaaaaatatgggtcaatgggccggcccatttttgacagctcta 257  Q
    |||| ||||||||||||||     ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49525 ttttagttagttttttaggcccgtcccggcccaaaaatatgggccaatgggccggcccatttttgacagctcta 49452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 9e-46; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 27126711 - 27126598
Alignment:
Q  130 gcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccaaaaatatgggtca 229  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | ||    
T  27126711 gcccggcccaacttttgtctggcccaaatgggcttgggccgaaaaaacccgagcgcattttttggttagttttttaggcccgacccaaaaatatgagcca 27126612  T
Q  230 atgggccggcccat 243  Q
    ||||||||||||||    
T  27126611 atgggccggcccat 27126598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 2612543 - 2612697
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||     ||||||| | ||||||||||||||||||||| |||||||||||| |||||    
T  2612543 atgggccaatgggccggtccaaagcccggtgggccagcccagccc-----aacttttttatggcccaaatgggcttgggccgaaaaagcccgagtgcatt 2612637  T
Q  189 ttttggttagttttttaggcccggccc-----aaaaatatgggtcaatgggccggcccat 243  Q
    |||||| ||||||||||||||||||||     ||||||||||| ||||||||||||||||    
T  2612638 ttttggctagttttttaggcccggcccggccaaaaaatatgggccaatgggccggcccat 2612697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 118 - 257
Target Start/End: Complemental strand, 39584993 - 39584855
Alignment:
Q  118 tgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccaa 217  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  ||||||||| ||| ||||||||||||||||||||    
T  39584993 tgggccagtccggcccggcccaacttttgtatggcccaaatgggcttgggccgaaaaagcccgaatgcatttttt-gttggttttttaggcccggcccaa 39584895  T
Q  218 aaatatgggtcaatgggccggcccatttttgacagctcta 257  Q
    ||||||||| | |||| || |||||||||||||| |||||    
T  39584894 aaatatgggccgatggaccagcccatttttgacaactcta 39584855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 26741374 - 26741263
Alignment:
Q  96 aatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggt 195  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||||||||||| |||||||| ||| ||||||||||||    
T  26741374 aatgggccggcccaaagtccggtgggccagcccggcccgacccaacttttgtatgtcccaaatgggcttgggccgaaaaagcctgagtgcattttttggt 26741275  T
Q  196 tagttttttagg 207  Q
    ||||||||||||    
T  26741274 tagttttttagg 26741263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 89 - 256
Target Start/End: Complemental strand, 37698162 - 37698000
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| ||||||||||||||||| |||||||||||||||| |||     |||||| || || |||||||||| ||||| |  |||||||||   |||||    
T  37698162 atgggctaatgggccggcccaaagtccggtgggccagcccgaccc-----aactttggtatgacccaaatgggattgggtcggaaaagcccggatgcatt 37698068  T
Q  189 ttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggcccatttttgacagctct 256  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  37698067 ttttggttaattttttaggcccggcccaaaaatatgggccaatgggccggcccatttttgacacctct 37698000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 15870891 - 15870794
Alignment:
Q  143 tttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccaaaaatatgggtcaatgggccggcc 240  Q
    ||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||    
T  15870891 tttgtatggtccaaatgggtttgggccaaaaaagcccgagtgcattttttggttagttttttaggcccggcccaaaaatatgggccaatagaccggcc 15870794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 130 - 257
Target Start/End: Complemental strand, 35917837 - 35917711
Alignment:
Q  130 gcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccaaaaatatgggtca 229  Q
    ||||| ||||||||| || ||||||| ||||||||||||  ||||| |||||| |||||||| || |||||||||||||||| || ||||||||||| ||    
T  35917837 gcccgccccaacttt-gtatggcccatatgggcttgggctgaaaaaacccgagtgcatttttgggctagttttttaggcccgacctaaaaatatgggcca 35917739  T
Q  230 atgggccggcccatttttgacagctcta 257  Q
    ||||||| ||||||||||||||||||||    
T  35917738 atgggccagcccatttttgacagctcta 35917711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 18404894 - 18404809
Alignment:
Q  127 ccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccgg 212  Q
    ||||||||||||||||||||| |||||||||| |||||||||| |||||||| ||| |||||||||||||||||||||||||||||    
T  18404894 ccggcccggcccaacttttgtatggcccaaatcggcttgggccgaaaaagcctgagtgcattttttggttagttttttaggcccgg 18404809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 6837850 - 6837736
Alignment:
Q  135 gcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagtt-ttttagg-----cccggcccaaaaatatgggtc 228  Q
    ||||||||||||| ||||||||||||||||||||| |||||||  ||| ||||||||| ||||||| |||||||     |||| |||||||||||||| |    
T  6837850 gcccaacttttgtatggcccaaatgggcttgggccgaaaaagcttgagtgcattttttagttagtttttttaggcccgacccgacccaaaaatatgggcc 6837751  T
Q  229 aatgggccggcccat 243  Q
    |||||||| ||||||    
T  6837750 aatgggccagcccat 6837736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 35596385 - 35596465
Alignment:
Q  130 gcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggccc 210  Q
    |||||||||||||||||| |||||||| |||||||||||| |||||| || ||  ||||||||| ||||||||||||||||    
T  35596385 gcccggcccaacttttgtatggcccaattgggcttgggccgaaaaagtcccagtacattttttgtttagttttttaggccc 35596465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 44599341 - 44599457
Alignment:
Q  132 ccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggc-----ccggcccaaaaatatggg 226  Q
    ||||||||| |||| | ||||||| ||| ||||||||| ||||| |||||| |||||||||||||||||||||||||     |||||||||||| |||||    
T  44599341 ccggcccaaattttttatggcccagatgagcttgggccgaaaaaccccgagtgcattttttggttagttttttaggcccagtccggcccaaaaacatggg 44599440  T
Q  227 tcaatgggccggcccat 243  Q
     |||||| |||| ||||    
T  44599441 ccaatggaccggtccat 44599457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 7990296 - 7990353
Alignment:
Q  134 ggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttt 191  Q
    |||||||||||||| |||||||||| |||||||||| |||||||||||| ||||||||    
T  7990296 ggcccaacttttgtatggcccaaataggcttgggccgaaaaagcccgagtgcattttt 7990353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 26909929 - 26909997
Alignment:
Q  124 agcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttg 193  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||| |  ||||||||||| ||||||||||    
T  26909929 agcccggaccgacccaacttttgtatggcccaaatgggcttggg-ctgaaaagcccgagtgcattttttg 26909997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 41427954 - 41428022
Alignment:
Q  157 atgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccaaaaatatgg 225  Q
    |||||||||| |||||||||| |||  |  ||||| || ||||||||||||||||| ||||||||||||    
T  41427954 atgggcttggaccaaaaaagctcgaatgagtttttgggctagttttttaggcccggtccaaaaatatgg 41428022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 1386693 - 1386655
Alignment:
Q  96 aatgggccggcccaaagcccggtgggccagcccggcccg 134  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  1386693 aatgggctggcccaaagcccgatgggccagcccggcccg 1386655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 27126734 - 27126706
Alignment:
Q  89 atgggccaatgggccggcccaaagcccgg 117  Q
    |||||||||||||||||||||||||||||    
T  27126734 atgggccaatgggccggcccaaagcccgg 27126706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 34677095 - 34677223
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttggg-ccaaaaaagcccgagcgcat 187  Q
    |||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  34677095 atgggctaatgggccggcccaaagcccggtgggccagccccgcctggcccaacttttgtatggcccaaatgggcttgggcccaaaaaagcccgagtgcat 34677194  T
Q  188 tttttggttagttttttaggcccggccca 216  Q
    |||||| ||||||||||||||||| ||||    
T  34677195 tttttgtttagttttttaggcccgaccca 34677223  T

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Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 130 - 257
Target Start/End: Original strand, 30044098 - 30044230
Alignment:
Q  130 gcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcc-----cggcccaaaaatatg 224  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||     |||||||||||||||    
T  30044098 gcccgacccaacttttgtatggcccaaatgggcttgggccgaaaaaccccgagtgcattttttggttagttttttaggcccgtctcggcccaaaaatatg 30044197  T
Q  225 ggtcaatgggccggcccatttttgacagctcta 257  Q
    || |||||||||||||||||||||| |||||||    
T  30044198 ggccaatgggccggcccatttttgatagctcta 30044230  T

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Target: chr6; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 15707361 - 15707247
Alignment:
Q  134 ggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccg-----gcccaaaaatatgggtc 228  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||     ||||||||||||||| |    
T  15707361 ggcccaacttttgtatggcccaaatgggcttgggccaaaaaagcccgagtgcatttttttgttagttttttaggcccggcccggcccaaaaatatgggcc 15707262  T
Q  229 aatgggccggcccat 243  Q
    |||||||||||||||    
T  15707261 aatgggccggcccat 15707247  T

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Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 127 - 259
Target Start/End: Complemental strand, 2978685 - 2978549
Alignment:
Q  127 ccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagtttttta-----ggcccggcccaaaaat 221  Q
    |||||||| |||||||||||| || |||||||||||||||||||||||||||||||  |||||||| ||||||||||||     || |||||||||||||    
T  2978685 ccggcccgacccaacttttgtttgacccaaatgggcttgggccaaaaaagcccgagtacatttttt-gttagttttttatgcccggtccggcccaaaaat 2978587  T
Q  222 atgggtcaatgggccggcccatttttgacagctctaat 259  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  2978586 atgggacaatggaccggcccatttttgacagctctaat 2978549  T

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Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 118 - 243
Target Start/End: Complemental strand, 34760464 - 34760334
Alignment:
Q  118 tgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttagg-----cccgg 212  Q
    ||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| || | ||| || ||||||||||||     |||||    
T  34760464 tgggccagcccggcccgacccaacttttgtatggcccaaatggggttgggccaaaaaagcccgagtgcgtgtttgggctagttttttaggcccaacccgg 34760365  T
Q  213 cccaaaaatatgggtcaatgggccggcccat 243  Q
    ||||||||||||||||||||| |||||||||    
T  34760364 cccaaaaatatgggtcaatggaccggcccat 34760334  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 11546034 - 11545929
Alignment:
Q  157 atgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggccc-----ggcccaaaaatatgggtcaatgggccggcccatttttgaca 251  Q
    |||||||||||||||||||||||||| || | ||| || |||||||||||||||     |||||||||||||||| || ||||||||||| |||||||||    
T  11546034 atgggcttgggccaaaaaagcccgagtgcgtgtttgggctagttttttaggcccaacccggcccaaaaatatgggccattgggccggcccgtttttgaca 11545935  T
Q  252 gctcta 257  Q
    ||||||    
T  11545934 gctcta 11545929  T

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Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 10321386 - 10321545
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| ||||| ||||||||||| || || ||||||||| |||||||||||||||||| || |||||||||| ||||||| ||||| |||  | | |||    
T  10321386 atgggctaatggtccggcccaaagtccagttggccagccctgcccggcccaacttttgtatgacccaaatgggattgggccgaaaaaaccccggtgtatt 10321485  T
Q  189 ttttggttagttttttagg-----cccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||  | ||||||||||||     |||||||||||||||| |  ||||||| ||||||||    
T  10321486 tttgtgctagttttttaggcccgacccggcccaaaaatatagaccaatgggtcggcccat 10321545  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 244
Target Start/End: Original strand, 32011683 - 32011826
Alignment:
Q  96 aatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggt 195  Q
    |||||| |||||||||||||| ||| ||| |||| |||| | |||||||||| |||||||||      ||||||||||||| | ||| |||||||| ||     
T  32011683 aatgggtcggcccaaagcccgatggaccaacccgacccgacgcaacttttgtatggcccaaa------tgggccaaaaaagtctgagtgcatttttgggc 32011776  T
Q  196 tag-ttttttaggcccggcccaaaaatatgggtcaatgggccggcccatt 244  Q
    ||| ||||||| ||| | ||||||||||||||  |||||||| |||||||    
T  32011777 tagtttttttacgccggacccaaaaatatgggctaatgggccagcccatt 32011826  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 6862130 - 6862060
Alignment:
Q  176 gcccgagcgcattttttggttagttttttaggcccggcc---caaaaatatgggtcaatgggccggcccat 243  Q
    ||||||| |||||||||||||| ||||||||||||||||   |  ||||||||| ||||||||||||||||    
T  6862130 gcccgagtgcattttttggttaattttttaggcccggccccgcccaaatatgggccaatgggccggcccat 6862060  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 21038801 - 21038837
Alignment:
Q  207 gcccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  21038801 gcccggaccaaaaatatgggccaatgggccggcccat 21038837  T

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Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 18405854 - 18405696
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| ||||||||||||||||||||| || |||||||||||| ||||||||||||||  |||||||||||||||||||  |||||||| ||| |||||    
T  18405854 atgggctaatgggccggcccaaagcccgatgtgccagcccggcctggcccaacttttgtacggcccaaatgggcttgggctgaaaaagcctgagtgcatt 18405755  T
Q  189 ttttggttagttttttagg-----cccggcccaaaaatatgggtcaatgggccggcccat 243  Q
    |||| ||||||||||||||     |||| |||||||||||||| ||||||| ||||||||    
T  18405754 tttt-gttagttttttaggcccgacccgacccaaaaatatgggccaatgggtcggcccat 18405696  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 28210814 - 28210927
Alignment:
Q  135 gcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttagg-----cccggcccaaaaatatgggtca 229  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     |||| |||||||||||||||||    
T  28210814 gcccaacttttgtatggcccaaatgggcttgggccaaaaaagcccgagtgcattttttggttagttttttaggctcgacccgacccaaaaatatgggtca 28210913  T
Q  230 atgggccggcccat 243  Q
    |||||||| |||||    
T  28210914 atgggccgacccat 28210927  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 10371303 - 10371421
Alignment:
Q  130 gcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagtttttta-----ggcccggcccaaaaatatg 224  Q
    ||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| |||||| ||||||||||||||     |||||||||||||||||||    
T  10371303 gcccgacccaacttttgtctggcccaaatgagcttgggccgaaaaagcccgagcacattttctggttagttttttaggcccggcccggcccaaaaatatg 10371402  T
Q  225 ggtcaatgggccggcccat 243  Q
    || |||||||||| |||||    
T  10371403 ggccaatgggccgccccat 10371421  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 34374740 - 34374658
Alignment:
Q  130 gcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccgg 212  Q
    ||||||||||| |||||| ||||||||||| ||||||||| ||||| |||||| |||||||||||||||||||||||| ||||    
T  34374740 gcccggcccaaattttgtatggcccaaatgagcttgggccgaaaaaccccgagtgcattttttggttagttttttaggtccgg 34374658  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 35540291 - 35540174
Alignment:
Q  89 atgggccaatgggccggcccaaagcccggtgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcatt 188  Q
    |||||| ||||||||| |||||||| || ||||||||||||||||     ||||||||| ||||||||| | |||||||   ||||| |||||| |||||    
T  35540291 atgggctaatgggccgtcccaaagctcgatgggccagcccggccc-----aacttttgtatggcccaaacgagcttgggttgaaaaaccccgagtgcatt 35540197  T
Q  189 ttttggttagttttttaggcccg 211  Q
    |||||||||||||||||||||||    
T  35540196 ttttggttagttttttaggcccg 35540174  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 18256549 - 18256622
Alignment:
Q  118 tgggccagcccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttt 191  Q
    |||| |||||||||||  ||| |||||||  ||| ||||||||| |||||| ||||||||||||| | ||||||    
T  18256549 tgggtcagcccggcccaaccccacttttgcatggaccaaatggggttgggcaaaaaaagcccgagtgtattttt 18256622  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 18961451 - 18961414
Alignment:
Q  96 aatgggccggcccaaagcccggtgggccagcccggccc 133  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  18961451 aatgggccggcccgaagcccggtgggccaacccggccc 18961414  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 18963324 - 18963361
Alignment:
Q  96 aatgggccggcccaaagcccggtgggccagcccggccc 133  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  18963324 aatgggccggcccgaagcccggtgggccaacccggccc 18963361  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 18720438 - 18720358
Alignment:
Q  96 aatgggccggcccaaagcccggtgggccagcccggcccgg-cccaacttttgtctggcccaaatgggcttgggccaaaaaa 175  Q
    |||||| || ||| ||||| | |||||||||||||||| | ||| |||| ||| ||| |||||||||||||||| ||||||    
T  18720438 aatgggtcgtcccgaagcctgatgggccagcccggccccgaccccacttatgtatgggccaaatgggcttgggcaaaaaaa 18720358  T

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Target: scaffold0137 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 24362 - 24262
Alignment:
Q  130 gcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggcccggcccaaaaatatgggtca 229  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||| |  | ||||||| |||||||||||||     ||||||||||||||| ||    
T  24362 gcccggcccaaattttgtatggcccaaatgggcttgggccaaaaaagcccaaatgtattttttcgttagttttttag-----gcccaaaaatatgggcca 24268  T
Q  230 atgggc 235  Q
    ||||||    
T  24267 atgggc 24262  T

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Target: scaffold0137; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 24385 - 24357
Alignment:
Q  89 atgggccaatgggccggcccaaagcccgg 117  Q
    |||||||||||||||||||||||||||||    
T  24385 atgggccaatgggccggcccaaagcccgg 24357  T

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Target: scaffold0242 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 3794 - 3701
Alignment:
Q  152 cccaaatgggcttgggccaaaaaagcccgagcgcattttttggttagttttttaggc-----ccggcccaaaaatatgggtcaatgggccggcc 240  Q
    |||||||| ||||||||| ||||| |||||| |||||||||||||||||||||||||     |||||||||||| ||||| |||||||||||||    
T  3794 cccaaatgagcttgggccgaaaaaccccgagtgcattttttggttagttttttaggcctggtccggcccaaaaacatgggccaatgggccggcc 3701  T

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Target: scaffold0125 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 22168 - 22106
Alignment:
Q  153 ccaaatgggcttgggccaaaaaagcccgagcgcatttttt-ggttagttttttaggcccggccc 215  Q
    ||||||||||||||||||||| |||||||| | ||||||| || ||| ||||||||||||||||    
T  22168 ccaaatgggcttgggccaaaatagcccgagtgtattttttgggctag-tttttaggcccggccc 22106  T

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