View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2171_low_4 (Length: 380)
Name: NF2171_low_4
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2171_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 17195930 - 17195696
Alignment:
| Q |
18 |
ggaagtgaatgtaaaattgtgttaattgcaaatttgcatatatatatttggcagccgcatccaggaaacgcttactaccaacgacacatcaacattaaca |
117 |
Q |
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| T |
17195930 |
ggaagtgaatgtaaaattgtgttaattgcaaatttgcatatatatatttggcagccgcatccaggaaacgcttactaccaacgacacatcaacattaaca |
17195831 |
T |
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| Q |
118 |
gatataaagta-gcaatgatcaaaagaaattcttaacgttaatcaaaaacttaattcaaaacaattacgaagtgcatcaaagcaatcaagtagacattga |
216 |
Q |
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| T |
17195830 |
gatataaagtaggcaatgatcaaaagaaattcttaacgttaatcaaaaacttaattcaaaacaattacgaagtgaatcaaagcaatcaagtagacattgt |
17195731 |
T |
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| Q |
217 |
aatcaacacctatgaagaattacaaactaagattt |
251 |
Q |
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| T |
17195730 |
aagcaacacctatgaagaattacaaactaagattt |
17195696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 94 - 251
Target Start/End: Original strand, 17184592 - 17184750
Alignment:
| Q |
94 |
accaacgacacatcaacattaacagatataaagtag-caatgatcaaaagaaattcttaacgttaatcaaaaacttaattcaaaacaattacgaagtgca |
192 |
Q |
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| T |
17184592 |
accaacgacacatcaacattaacagatataaagtaggcaatgatcaaaagaaattcttaacgttaattaaaaacttaattcaaaacaattacgaagtgca |
17184691 |
T |
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| Q |
193 |
tcaaagcaatcaagtagacattgaaatcaacacctatgaagaattacaaactaagattt |
251 |
Q |
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| T |
17184692 |
tcaaagcaatcaagtagacattgaaatcaacacctatgaagaattacaaactaagattt |
17184750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 250 - 365
Target Start/End: Original strand, 17184788 - 17184903
Alignment:
| Q |
250 |
ttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaacaaactcttcgagccaagtcttcgtgaagacatagtattggtctgaa |
349 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
17184788 |
ttgatcccagcgaaggccgatttgatcgcctttattcaatttccttcttttaacaaactcttcgatccaagtcttcgtgaagacatagtatttgtctgaa |
17184887 |
T |
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| Q |
350 |
gcccatatttttaaaa |
365 |
Q |
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||||||||||| |||| |
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| T |
17184888 |
gcccatattttgaaaa |
17184903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 250 - 365
Target Start/End: Complemental strand, 17195658 - 17195543
Alignment:
| Q |
250 |
ttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaacaaactcttcgagccaagtcttcgtgaagacatagtattggtctgaa |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
17195658 |
ttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaataaactcttcgatccaagtcttcgtgaagacatagtatttgtctgaa |
17195559 |
T |
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| Q |
350 |
gcccatatttttaaaa |
365 |
Q |
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||||||||||| |||| |
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| T |
17195558 |
gcccatattttgaaaa |
17195543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 17184476 - 17184552
Alignment:
| Q |
18 |
ggaagtgaatgtaaaattgtgttaattgcaaatttgcatatatatatttggcagccgcatccaggaaacgcttacta |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
17184476 |
ggaagtgaatgtaaaattgtgttaattgcaaatttgcatatatatatttggcagcagcatccagaaaacgcttacta |
17184552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 333
Target Start/End: Complemental strand, 17619883 - 17619799
Alignment:
| Q |
249 |
tttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaacaaactcttcgagccaagtcttcgtgaagac |
333 |
Q |
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| T |
17619883 |
tttgatcccatcgaagaccgatttgatcgcctttcttcagttcccttctgttaacaaactctttggtccaagtcttggtgaagac |
17619799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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