View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2171_low_5 (Length: 379)
Name: NF2171_low_5
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2171_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 28739931 - 28740228
Alignment:
| Q |
20 |
tgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaaccattggaagaaaccccacaaaaagctaaaggaga |
119 |
Q |
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| T |
28739931 |
tgataggcttctagaccaaatgtggggaagtttgcaaatccacaagcatcaccagcagtgaaaaaccattggaagaaaccccacaaaaagctaaaggaga |
28740030 |
T |
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| Q |
120 |
agaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgttgataagatgagctgttgcggtaccacttggata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28740031 |
agaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgttgataagatgagctgttgcggtaccacttggata |
28740130 |
T |
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| Q |
220 |
tgtcaatccgaagtcaacaatcataatctgcaaaagggaaacattaaattaaaactaaatgtttggactcattcccatcccatgttttaaaaatcgattc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
28740131 |
tgtcaatccgaagtcaacaatcataatctgcaaaagggaaacattaaattaaaac------tttggactcattcccatcccatgttttaaaaattgattc |
28740224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 28749873 - 28750151
Alignment:
| Q |
20 |
tgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaaccattggaagaaaccccacaaaaagctaaaggaga |
119 |
Q |
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| T |
28749873 |
tgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaaccattggaagaaaccccacaaaaagctaaaggaga |
28749972 |
T |
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| Q |
120 |
agaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgttgataagatgagctgttgcggtaccacttggata |
219 |
Q |
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| T |
28749973 |
agaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgttgataagatgagctgttgctgtaccacttggata |
28750072 |
T |
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| Q |
220 |
tgtcaatccgaagtcaacaatcataatctgcaaaagggaaacattaaattaaaactaaatgtttggactcattcccatc |
298 |
Q |
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| T |
28750073 |
tgtcaatccgaagtcaacaatcataatctgcaaaagggaaacattaaattaaaactaaatgtttggactcattctcatc |
28750151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 28753888 - 28754076
Alignment:
| Q |
16 |
gttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaaccattggaagaaaccccacaaaaagctaaag |
115 |
Q |
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| T |
28753888 |
gttttgatatgcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaaccattggaagaaaccccacaaaaagctaaag |
28753987 |
T |
|
| Q |
116 |
gagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgttgataagatgagctgttgc |
204 |
Q |
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| T |
28753988 |
gagaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgttgataagatgagctgttgc |
28754076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 39943025 - 39942791
Alignment:
| Q |
18 |
tttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaaccattggaagaaaccccacaaaaagctaaagga |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |
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| T |
39943025 |
tttgataggcttctagaccaaatgtgggaaagtttgtaaatccacaagaatcaccagcagcgaaaaaccattggaagaaaccccacaagaagctgaagga |
39942926 |
T |
|
| Q |
118 |
gaagaactttccaagtgcttttacttgcttctttgctagtttggcaccttcagatgtatggaaactgttgataagatgagctgttgcggtaccacttgga |
217 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39942925 |
gaagaactttcccagtgcttttacttgcttctttgctagtttggcaccttctgatgtatggaaactgttgataagatgagctgttgcggtaccacttgga |
39942826 |
T |
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| Q |
218 |
tatgtcaatccgaagtcaacaatcataatctgcaa |
252 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
39942825 |
tatgtcaatttgaagtcaacaatcataatctgcaa |
39942791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 29247219 - 29247307
Alignment:
| Q |
148 |
ctttgctagtttggcaccttcagatgtatggaaactgttgataagatgagctgttgcggtaccacttggatatgtcaatccgaagtcaa |
236 |
Q |
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||||||||||||||| |||| || || ||||| |||||||| |||||||| ||||| ||||||||||||||||| ||| |||||||| |
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| T |
29247219 |
ctttgctagtttggctccttgaggagtgtggaagctgttgatgagatgagcagttgcagtaccacttggatatgttaatttgaagtcaa |
29247307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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