View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2171_low_7 (Length: 371)

Name: NF2171_low_7
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2171_low_7
NF2171_low_7
[»] chr5 (4 HSPs)
chr5 (1-205)||(37894180-37894384)
chr5 (169-357)||(37894385-37894573)
chr5 (8-122)||(37189287-37189400)
chr5 (200-297)||(28521356-28521453)
[»] chr6 (1 HSPs)
chr6 (226-294)||(9729813-9729881)
[»] chr8 (2 HSPs)
chr8 (200-302)||(35861069-35861169)
chr8 (226-297)||(5099808-5099879)
[»] chr7 (2 HSPs)
chr7 (231-294)||(15011366-15011429)
chr7 (233-294)||(36801163-36801224)
[»] chr2 (2 HSPs)
chr2 (226-294)||(42428168-42428236)
chr2 (226-294)||(41993462-41993530)
[»] chr4 (1 HSPs)
chr4 (231-304)||(23860498-23860571)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 37894180 - 37894384
Alignment:
Q  1 ttgtaatttgattaattacaactcaattgtgttatgatgtcaataagtacggtattgatacaagaattatctgcatgtgtaataattgtataagaataaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  37894180 ttgtaatttgattaattacaactcaattgtgttatgatgtcaataagtacggtattgatagaagaattatcagcatgtgtaataattgtataagaataaa 37894279  T
Q  101 gaatgtttatgtttctaattattatcggcatgtgtaataactgcttaaactatgatttataacatgtttgtttttacggcaaattgacaacatacacgtg 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |    
T  37894280 gaatgtttatgtttctaattattatctgcatgtgtaataactgcttaaactatgatttatagcatgtttgtttttaccgcaaattgacaacatacacgcg 37894379  T
Q  201 tttaa 205  Q
    |||||    
T  37894380 tttaa 37894384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 169 - 357
Target Start/End: Original strand, 37894385 - 37894573
Alignment:
Q  169 tgtttttacggcaaattgacaacatacacgtgtttaaagtagaagctagcaatagtggcttcacaattttcacgtttaaagtgcattgggaagtggaaat 268  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||    
T  37894385 tgtttttacggcaaattgacaacatacacgcgtttaaagtagaagctagcaacagtggtttcataattttcacgtttaaagtgcattgggaagtggaaat 37894484  T
Q  269 gagcctccaaaaactaatccaaacacacatttagtgatcgaccgatttgatctaaaaaagtcatcgtgagtgcaatatgcgtaattcat 357  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37894485 gagcctccaaaaactaatccaaacacacatttagtgatggaccgatttgatctaaaaaagtcatcgtgagtgcaatatgcgtaattcat 37894573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 37189287 - 37189400
Alignment:
Q  8 ttgattaattacaactcaattgtgttatgatgtcaataagtacggtattgatacaagaattatctgcatgtgtaataattgtataagaataaagaatgtt 107  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||    
T  37189287 ttgattaatttcaactcaattgtgttatcatgtcaataagtacggtattgatacaagaattatctgcatgtgtaataat--tatacgaataaagaatgtt 37189384  T
Q  108 t-atgtttctaattat 122  Q
    | | ||||||||||||    
T  37189385 taaggtttctaattat 37189400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 297
Target Start/End: Original strand, 28521356 - 28521453
Alignment:
Q  200 gtttaaagtagaagctagcaatagtggcttcacaattttcacgtttaaagtgcattgggaagtggaaatgagcctccaaaaactaatccaaacacaca 297  Q
    |||||||||||||||||  ||| ||  ||||| |||||||| |||||||||| ||||| |||||||||||||| || | || |||||| ||| |||||    
T  28521356 gtttaaagtagaagctattaattgtaacttcataattttcatgtttaaagtgaattggaaagtggaaatgagcttctataagctaatctaaatacaca 28521453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 9729813 - 9729881
Alignment:
Q  226 gcttcacaattttcacgtttaaagtgcattgggaagtggaaatgagcctccaaaaactaatccaaacac 294  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  9729813 gcttcacaattttcacgtttaaagtgcattgggaagtggagatgagcctccaaaagctaatccaaacac 9729881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 302
Target Start/End: Original strand, 35861069 - 35861169
Alignment:
Q  200 gtttaaagtagaagctagcaatagtggcttcacaattttcacgtttaaagtgcattgggaagtggaaatgagcctccaaaaactaatccaaacacacatt 299  Q
    |||||| |||||| |||  ||| ||||||||| ||||||||| |||||  |||| |||||||||||||||||||||||||| |||||||||| ||||| |    
T  35861069 gtttaaggtagaaactactaattgtggcttcataattttcacatttaa--tgcactgggaagtggaaatgagcctccaaaagctaatccaaatacacact 35861166  T
Q  300 tag 302  Q
    |||    
T  35861167 tag 35861169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 5099879 - 5099808
Alignment:
Q  226 gcttcacaattttcacgtttaaagtgcattgggaagtggaaatgagcctccaaaaactaatccaaacacaca 297  Q
    |||||| ||||||||| ||||||||||||    ||||| ||||||| |||||||| ||||||||||||||||    
T  5099879 gcttcataattttcacttttaaagtgcatctaaaagtgaaaatgagtctccaaaagctaatccaaacacaca 5099808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 15011429 - 15011366
Alignment:
Q  231 acaattttcacgtttaaagtgcattgggaagtggaaatgagcctccaaaaactaatccaaacac 294  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  15011429 acaattttcacatttaaagtgcattgagaagttgaaatgagcctccaaaagctaatccaaacac 15011366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 36801224 - 36801163
Alignment:
Q  233 aattttcacgtttaaagtgcattgggaagtggaaatgagcctccaaaaactaatccaaacac 294  Q
    |||||||| ||||||||||||||||||||| ||||| | |||  |||||| |||| ||||||    
T  36801224 aattttcatgtttaaagtgcattgggaagtagaaataaacctataaaaacaaatcgaaacac 36801163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 42428168 - 42428236
Alignment:
Q  226 gcttcacaattttcacgtttaaagtgcattgggaagtggaaatgagcctccaaaaactaatccaaacac 294  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||||| ||||||||  ||||||||||||    
T  42428168 gcttcacatttttcacatttaaagtgcattggaaagtggaaatgaggctccaaaagttaatccaaacac 42428236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 41993530 - 41993462
Alignment:
Q  226 gcttcacaattttcacgtttaaagtgcattgggaagtggaaatgagcctccaaaaactaatccaaacac 294  Q
    |||||||||||||| ||||||||||  ||||  ||||| |||||||||| ||||| | |||||||||||    
T  41993530 gcttcacaattttcgcgtttaaagtatattgaaaagtgaaaatgagccttcaaaagcaaatccaaacac 41993462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 23860571 - 23860498
Alignment:
Q  231 acaattttcacgtttaaagtgcattgggaagtggaaatgagcctccaaaaactaatccaaacacacatttagtg 304  Q
    ||||||||| |||||||| |||||||  ||||| |||||| |||| |||||||||||||||||| || ||||||    
T  23860571 acaattttcgcgtttaaaatgcattgaaaagtgaaaatgaacctctaaaaactaatccaaacacccacttagtg 23860498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University