View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2171_low_9 (Length: 307)
Name: NF2171_low_9
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2171_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 46 - 289
Target Start/End: Original strand, 26310945 - 26311188
Alignment:
| Q |
46 |
ttaattcctcggaagtagctttgtggcatgaagaaggtaaggcgagtcaagactatcctccttgtccaaactaggactttggggtcggtctagtcgatct |
145 |
Q |
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| T |
26310945 |
ttaattcctcggaagtagttttgtggcatgaagaaggtaaggcgagtcaagactatcctccttgtccaaactaggactttggggtcggtctagtcgatct |
26311044 |
T |
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| Q |
146 |
tcattccatggcattgtgttaacatgaatctcatgaggttcccggtggtggacagatcatcctttaagatagaggttcttatatcccctcttggtactcc |
245 |
Q |
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| T |
26311045 |
tcattccatggcattgtgttaacatgaatctcatgaggttcccgatggtggacagatcatcttttaagatagaggttcttatattccctcttggtactcc |
26311144 |
T |
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| Q |
246 |
tattgaggtatggatccctagaatagatgactccattgaaattg |
289 |
Q |
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| T |
26311145 |
tattgaggtatgggtccctagaatggatgactccattgaaattg |
26311188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 26316412 - 26316479
Alignment:
| Q |
240 |
tactcctattgaggtatggatccctagaatagatgactccattgaaattgaacaaaatgaggctagta |
307 |
Q |
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| T |
26316412 |
tactcctattgaggtatagatccctagaatggattactccattaaaattgaacaaaatgaggctagta |
26316479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 26316336 - 26316380
Alignment:
| Q |
132 |
ggtctagtcgatcttcattccatggcattgtgttaacatgaatct |
176 |
Q |
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| T |
26316336 |
ggtctagtcgatcttcattccatgacattgcgttaacatgaatct |
26316380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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