View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2172-Insertion-2 (Length: 799)
Name: NF2172-Insertion-2
Description: NF2172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2172-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 682; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 10 - 779
Target Start/End: Complemental strand, 8696259 - 8695490
Alignment:
| Q |
10 |
aagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagctattgatcacaacaacaaaaggatgtatctaaccgtgcaagattgt |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696259 |
aagagcattgcaaacaagagggtaccttttgaatgcggccaaggaactcaaagctattgatcacaacaacaaaaggatgtatctaaccgtgcaagattgt |
8696160 |
T |
|
| Q |
110 |
gtgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaactaaaaaggttgaacaaatttaacaccatcatcaatgataaagtgttgt |
209 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8696159 |
gtgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaactaaaaaggttgaacaaatttaacacaatcatcaatgataaagtgttgt |
8696060 |
T |
|
| Q |
210 |
ggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtacaatcattccctggtcataggatgagcaaaagagttgc |
309 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| || ||||| |
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| T |
8696059 |
ggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtgcaatcgttccctggtcatagaatgagcaagagggttgc |
8695960 |
T |
|
| Q |
310 |
gacgattaagattaaggcgaagaatgttgcagaagttaccagtaacgcactcgctttgtttcatagttatgctactaggtatcagcaagaagcagctaga |
409 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||| |
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| T |
8695959 |
gacgattaaggtgaaggcgaagaatgttgcagaagttactagtaacgcacttgctttgtttcaaagttatgctacaaggtatcgacaagaagcagctaga |
8695860 |
T |
|
| Q |
410 |
acttccaagaagccatgaaaatctttaatcatactttttgtcaccctttgtttgtccatgtatatgatacatggttttttctttgggtggttttgcatcg |
509 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8695859 |
acttccaagaagccatgaaaatctttaatcatactttttgtcaccctttgtttgtccatgtatatgatacatggttttttctttgggtggttttgcaacg |
8695760 |
T |
|
| Q |
510 |
ttatttattaagtgcaatattgatgtatgaatgtaagattaactccattactatctatgttaaaagtaatatttatgctacatatattttgttgttgagt |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
8695759 |
ttatttattaagtgcaatattgatgtatgaatgtaagattaactccattactatctatgttaacagtaatatttatgctacctatattttgttgttgagt |
8695660 |
T |
|
| Q |
610 |
atttcgttggttggtaatggttaaataatttgaagatcgtgtgtttggtagcggggttttaggtggttatgagtggtaatccagtaaggccacattaata |
709 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8695659 |
atttcgttggttggtaatggttaaataatttgaagaccgtgtgtttggtagcggggttttaggtggttatgagtggtaatctagtaaggccacattaata |
8695560 |
T |
|
| Q |
710 |
gaggatctaggtgaggtgacacattctaaaaagagcatggttgtatatcacaaaagttgcatattcttgg |
779 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
8695559 |
gaggatctaggtgaggtgacacattctaaaaagagcatggttgtatatcataaaagttgcatattgttgg |
8695490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 572
Target Start/End: Original strand, 8674776 - 8675349
Alignment:
| Q |
10 |
aagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagctattgatcacaacaacaaaaggatgtatctaaccgtgcaagattgt |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| |
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| T |
8674776 |
aagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagctattgatcacaacaacaagaggatgtacctaaccgttcaagattgt |
8674875 |
T |
|
| Q |
110 |
gtgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaactaaaaaggttgaacaaatttaacaccatcatcaatgataaagtgttgt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8674876 |
gtgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaactaaaaaggttgaacaaatttaacaccatcatcaatgataaagtgttgt |
8674975 |
T |
|
| Q |
210 |
ggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtacaatcattccctggtcataggatgagcaaaagagttgc |
309 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| || ||||| |
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| T |
8674976 |
ggcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtgcaatcgttccctggtcatagaatgagcaagagggttgc |
8675075 |
T |
|
| Q |
310 |
gacgattaagattaaggcgaagaatgttgcagaagttaccagtaacgcactcgctttgtttcatagttatgctactaggtatcagcaagaag---cagct |
406 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||| ||||||| |||| || | ||| |
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| T |
8675076 |
gacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcacttgctttgtttcaaagttatgctacaaggtatcgacaagcagccacggct |
8675175 |
T |
|
| Q |
407 |
agaacttccaagaagccatgaaaatcttt--aatcat-act--ttttgtcaccctttgtttgtccatgtatatg--atacatggttttttctttgggtgg |
499 |
Q |
| |
|
|||||| |||||||||||||||| |||| |||||| ||| |||| |||||| ||||||||||||||||||| |||||| |||||||||| |||||| |
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|
| T |
8675176 |
agaactgtcaagaagccatgaaaaacttttaaatcataacttattttatcaccccttgtttgtccatgtatatgatatacat-gttttttcttcgggtgg |
8675274 |
T |
|
| Q |
500 |
ttttgcatcgttatttattaagtgcaatattgatg--tatgaatgtaagattaactccattactatctatgttaa |
572 |
Q |
| |
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|||| ||| ||| ||||| ||| |||||||||| |||||||||| |||||||| ||||| ||| |||||||| |
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| T |
8675275 |
ttttacatagttctttatctagtttaatattgatgtatatgaatgtatgattaacttcattattatttatgttaa |
8675349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 517
Target Start/End: Original strand, 8693008 - 8693520
Alignment:
| Q |
11 |
agagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagctattgatcacaacaacaaaaggatgtatctaaccgtgcaagattgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8693008 |
agagcattgcaaacaagagggtaccttttgaatgtggccaaggaactcaaagctattgatcacaacaacaaaaggatgtacctaaccgtgcaagattgtg |
8693107 |
T |
|
| Q |
111 |
tgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaactaaaaaggttgaacaaatttaacaccatcatcaatgataaagtgttgtg |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
8693108 |
tgaatcaaatcaatgatagtgttgatcaacttagccaagccatcaaagaactaaaaaggttgaataaatttaacacaatcatcaatgataaagtgttgtg |
8693207 |
T |
|
| Q |
211 |
gcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtacaatcattccctggtcataggatgagcaaaagagttgcg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||| || |||||| |
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|
| T |
8693208 |
gcacataagtaatgttgagacatgggttagcactgccttaaccgatgctagtagttgtgtgcaatcgttccctggtcatagaatgagcaatagtgttgcg |
8693307 |
T |
|
| Q |
311 |
acgattaagattaaggcgaagaatgttgcagaagttaccagtaacgcactcgctttgtttcatagttatgctactaggtatcagcaagaag---cagcta |
407 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||| ||||||| |||| || | |||| |
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|
| T |
8693308 |
acgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcacttgctttgtttcaaagttatgctacaaggtatcgacaagcagccacggcta |
8693407 |
T |
|
| Q |
408 |
gaacttccaagaagccatgaaaatcttt-aatcatac---tttttgtcaccctttgtttgtccatgtatatgatacatggttttttctttgggtggtttt |
503 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
8693408 |
gaacttcgaagaagccatgaaaaactttaaatcataccttattttgtcaccccttgtttgttcatgtatatgatacat-gttttttctttgggtggtttt |
8693506 |
T |
|
| Q |
504 |
gcatcgttatttat |
517 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8693507 |
acatcgttatttat |
8693520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 516
Target Start/End: Complemental strand, 8687689 - 8687182
Alignment:
| Q |
11 |
agagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagctattgatcacaacaacaaaaggatgtatctaaccgtgcaagattgtg |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
8687689 |
agagcattgcaaacaagaggataccttttgaatgcggcaaaggaactcaaagctattgatcacaacaacaagaggatgtacctaaccgtgcaagattgtg |
8687590 |
T |
|
| Q |
111 |
tgaatcaaatgaatgatagtgttgatcaacttagtcaagccatcaaagaactaaaaaggttgaacaaatttaacaccatcatcaatgataaagtgttgtg |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8687589 |
tgaatcaaattaatgatagtgttgatcaacttagtcaagccatcaaagaactaaaaaggttgaataaatttaacacaatcatcaatgataaagtgttgtg |
8687490 |
T |
|
| Q |
211 |
gcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtacaatcattccctggtcataggatgagcaaaagagttgcg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |
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| T |
8687489 |
gcacataagtaatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtgcaatcgttccctggtcatagaatgagcaaaagagttgcg |
8687390 |
T |
|
| Q |
311 |
acgattaagattaaggcgaagaatgttgcagaagttaccagtaacgcactcgctttgtttcatagttatgctactaggtatcagcaagaagcagctagaa |
410 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
8687389 |
acgattaaggtgaaggcgaagaatgttgcagaagtaactagtaatgcacttgctttgtttcaaagttatgctactaggtatcgacaagcagcggctagaa |
8687290 |
T |
|
| Q |
411 |
cttccaagaagccatgaaaatctt-taatcatac---tttttgtcaccctttgtttgtccatgtatatgatacatggttttttctttgggtggttttgca |
506 |
Q |
| |
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| |||||||||||||||| ||| |||||||| |||| |||||| |||||||||||||||||| | |||| ||||||||||||||||||||| || |
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| T |
8687289 |
ccgtcaagaagccatgaaaaacttgaaatcataccttattttatcaccccttgtttgtccatgtatat-acacat-gttttttctttgggtggttttaca |
8687192 |
T |
|
| Q |
507 |
tcgttattta |
516 |
Q |
| |
|
| |||||||| |
|
|
| T |
8687191 |
tagttattta |
8687182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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