View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2172-Insertion-4 (Length: 334)

Name: NF2172-Insertion-4
Description: NF2172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2172-Insertion-4
NF2172-Insertion-4
[»] chr8 (4 HSPs)
chr8 (9-242)||(42663798-42664040)
chr8 (287-334)||(42663707-42663754)
chr8 (8-48)||(22632326-22632366)
chr8 (8-48)||(22632972-22633012)
[»] chr3 (9 HSPs)
chr3 (13-242)||(15288086-15288326)
chr3 (15-109)||(9830583-9830677)
chr3 (153-242)||(9830701-9830790)
chr3 (286-334)||(9830833-9830881)
chr3 (292-332)||(15287997-15288037)
chr3 (8-46)||(20807941-20807979)
chr3 (8-46)||(54308457-54308495)
chr3 (8-48)||(15287571-15287611)
chr3 (8-48)||(24511998-24512038)
[»] chr7 (6 HSPs)
chr7 (13-87)||(42818517-42818592)
chr7 (8-52)||(767140-767184)
chr7 (8-48)||(767970-768010)
chr7 (13-46)||(36611560-36611593)
chr7 (8-48)||(41965781-41965821)
chr7 (8-48)||(46491692-46491732)
[»] chr4 (6 HSPs)
chr4 (8-108)||(14527519-14527620)
chr4 (13-86)||(26354197-26354271)
chr4 (8-42)||(51386460-51386494)
chr4 (8-48)||(18363657-18363697)
chr4 (8-52)||(34941506-34941550)
chr4 (8-48)||(36599231-36599271)
[»] chr1 (5 HSPs)
chr1 (8-48)||(12449316-12449356)
chr1 (8-48)||(26240875-26240915)
chr1 (8-46)||(16449559-16449597)
chr1 (8-46)||(16459133-16459171)
chr1 (5-45)||(14166914-14166954)
[»] scaffold0627 (1 HSPs)
scaffold0627 (13-86)||(6473-6547)
[»] chr2 (3 HSPs)
chr2 (8-46)||(6873526-6873564)
chr2 (13-86)||(20606886-20606960)
chr2 (8-48)||(20606290-20606330)
[»] chr5 (6 HSPs)
chr5 (8-45)||(20476123-20476160)
chr5 (8-108)||(23257912-23258011)
chr5 (8-48)||(24565577-24565617)
chr5 (8-48)||(24606613-24606653)
chr5 (8-48)||(39937910-39937950)
chr5 (8-48)||(40372164-40372204)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 8e-92; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 42664040 - 42663798
Alignment:
Q  9 attttagggtgggggttcaattaagtccctcaccggtggatcatcttaacaataattaagaatcatttgattaatcaaatacacaattcttattatacac 108  Q
    ||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  42664040 attttagggtgagggttcaattaagtccctcactggtggaccatcttaacaataattaagagtcatttgattaatcaaatacataattcttattatacac 42663941  T
Q  109 ta---------aattacaattccattctttttgttctcgttttcttcctccccttctctgctctatttccttcagatcagatgtgttaaaaaagggggaa 199  Q
    |          |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  42663940 tgtatacactgaattacaattccattcttttcgttctcgttttcttcctccccttctatgctctatttccttcagatcatatgtgttaaaaaagggggaa 42663841  T
Q  200 cacctcttccccacccaattacttctttagcctgtaatttctc 242  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  42663840 cacctcttccccacccaattacttctttagcctataatttctc 42663798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 42663754 - 42663707
Alignment:
Q  287 gttagaaatttgattctgccaaaatagaatgcaatatcaaatgattcg 334  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42663754 gttagaaatttgattatgccaaaatagaatgcaatatcaaatgattcg 42663707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 22632326 - 22632366
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtgga 48  Q
    |||| ||||||| ||| ||||||||||||||||||||||||    
T  22632326 gattctagggtgagggatcaattaagtccctcaccggtgga 22632366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 22633012 - 22632972
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtgga 48  Q
    |||| ||||||| ||| ||||||||||||||||||||||||    
T  22633012 gattctagggtgagggatcaattaagtccctcaccggtgga 22632972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 15288326 - 15288086
Alignment:
Q  13 tagggtgggggttcaattaagtccctcaccggtggatcatcttaacaataattaagaatcatttgattaatcaaatacacaattcttattatacacta-- 110  Q
    ||||||| || ||||||||||| |||||||| || | ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||       
T  15288326 tagggtgaggattcaattaagttcctcaccgatgaaccatcttaactataattaagagtcatttgattaatcaaatacacaattcttattatacactgta 15288227  T
Q  111 -------aattacaattccattctttttgttctcgttttcttcctccccttc-tctgctctatttccttcagatcagatgtgttaaaaaagggggaacac 202  Q
           |||||||||| ||||||||| ||||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||||||    
T  15288226 tacactgaattacaatttcattcttttcgttctcgttttcttcctccccctaatctgctctgtttccttcagatcagatgtgttaaaaaagggggaacac 15288127  T
Q  203 ct-cttccccacccaattacttctttagcctgtaatttctc 242  Q
    || ||||||||||||||||||||||||||||||||||||||    
T  15288126 ctccttccccacccaattacttctttagcctgtaatttctc 15288086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 9830583 - 9830677
Alignment:
Q  15 gggtgggggttcaattaagtccctcaccggtggatcatcttaacaataattaagaatcatttgattaatcaaatacacaattcttattatacact 109  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9830583 gggtgagggttcaattaagtccctcaccggtggaccatcttaacaataattaagagtcatttgattaatcaaatacacaattcttattatacact 9830677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 9830701 - 9830790
Alignment:
Q  153 ttctctgctctatttccttcagatcagatgtgttaaaaaagggggaacacct-cttccccacccaattacttctttagcctgtaatttctc 242  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||| || |||||||||||||||||||||||| ||||||| |||||    
T  9830701 ttctctgctctatttccttcagatcatatatgttaaaaaagggggaacaactccttccccacccaattacttcttta-cctgtaacttctc 9830790  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 9830833 - 9830881
Alignment:
Q  286 ggttagaaatttgattctgccaaaatagaatgcaatatcaaatgattcg 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9830833 ggttagaaatttgattctgccaaaatagaatgcaatatcaaatgattcg 9830881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 15288037 - 15287997
Alignment:
Q  292 aaatttgattctgccaaaatagaatgcaatatcaaatgatt 332  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  15288037 aaatttgattatgccaaaatagaatgcaatatcaaatgatt 15287997  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 20807941 - 20807979
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtg 46  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  20807941 gattctagggtgagggttcaattaagtccctcaccggtg 20807979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 54308457 - 54308495
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtg 46  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  54308457 gattctagggtgagggttcaattaagtccctcaccggtg 54308495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 15287571 - 15287611
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtgga 48  Q
    |||| ||||||| |||| |||||||||||||||||||||||    
T  15287571 gattctagggtgagggtccaattaagtccctcaccggtgga 15287611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 24511998 - 24512038
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtgga 48  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  24511998 gattttagggtgagggagcaattaagtccctcaccggtgga 24512038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 42818592 - 42818517
Alignment:
Q  13 tagggtgggggttcaattaagtccctcaccggtggatca-tcttaacaataattaagaatcatttgattaatcaaa 87  Q
    ||||||| ||||||||||||||||||||||||||||||| |  ||| || || ||||||||||| |||||||||||    
T  42818592 tagggtgagggttcaattaagtccctcaccggtggatcacttataataacaaataagaatcattagattaatcaaa 42818517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 767140 - 767184
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtggatcat 52  Q
    |||| ||||||| |||| |||||||||||||||||||||||||||    
T  767140 gattctagggtgagggtccaattaagtccctcaccggtggatcat 767184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 768010 - 767970
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtgga 48  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  768010 gattttagggtgagggtccaattaagtccctcaccggtgga 767970  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 36611560 - 36611593
Alignment:
Q  13 tagggtgggggttcaattaagtccctcaccggtg 46  Q
    ||||||| ||||||||||||||||||||||||||    
T  36611560 tagggtgagggttcaattaagtccctcaccggtg 36611593  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 41965821 - 41965781
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtgga 48  Q
    |||| ||||||| |||| |||||||||||||||||||||||    
T  41965821 gattctagggtgagggtccaattaagtccctcaccggtgga 41965781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 46491732 - 46491692
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtgga 48  Q
    |||| ||||||| |||||||| |||||||||||||||||||    
T  46491732 gattctagggtgagggttcaactaagtccctcaccggtgga 46491692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 14527620 - 14527519
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtggatca-tcttaacaataattaagaatcatttgattaatcaaatacacaattcttattatac 106  Q
    |||| ||||||| ||| |||||||||||||||||||||| | || | | || ||||||||||| ||||| |||||||||| |||| |  |||||||||||    
T  14527620 gattctagggtgagggatcaattaagtccctcaccggtgaaccactatgaataataattaagagtcattagattaatcaagtacatatatcttattatac 14527521  T
Q  107 ac 108  Q
    ||    
T  14527520 ac 14527519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 26354271 - 26354197
Alignment:
Q  13 tagggtgggggttcaattaagtccctcaccggtggatcatc-ttaacaataattaagaatcatttgattaatcaa 86  Q
    ||||||| ||||||||||||||||||||| |||||| || | | |||||| ||||||| |||||  |||||||||    
T  26354271 tagggtgagggttcaattaagtccctcacaggtggaccaccatgaacaattattaagagtcattaaattaatcaa 26354197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 51386460 - 51386494
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcacc 42  Q
    |||||||||||| ||||||||||||||||||||||    
T  51386460 gattttagggtgagggttcaattaagtccctcacc 51386494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 18363697 - 18363657
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtgga 48  Q
    |||| ||||||| |||||||||||||| |||||||||||||    
T  18363697 gattctagggtgagggttcaattaagttcctcaccggtgga 18363657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 34941506 - 34941550
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtggatcat 52  Q
    |||| ||||||| |||||||||||||||||||||  |||||||||    
T  34941506 gattctagggtgagggttcaattaagtccctcactagtggatcat 34941550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 36599231 - 36599271
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtgga 48  Q
    |||| ||||||| |||||||||||||| |||||||||||||    
T  36599231 gattctagggtgagggttcaattaagttcctcaccggtgga 36599271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 12449356 - 12449316
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtgga 48  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  12449356 gattttagggtgagggatcaattaagtccctcaccggtgga 12449316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 26240915 - 26240875
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtgga 48  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  26240915 gattctagggtgagggttcaattaagtccctcaccggtgga 26240875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 16449559 - 16449597
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtg 46  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  16449559 gattctagggtgagggttcaattaagtccctcaccggtg 16449597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 16459133 - 16459171
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtg 46  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  16459133 gattctagggtgagggttcaattaagtccctcaccggtg 16459171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 14166954 - 14166914
Alignment:
Q  5 acagattttagggtgggggttcaattaagtccctcaccggt 45  Q
    ||||||| ||||||| ||| |||||||||||||||||||||    
T  14166954 acagattctagggtgagggctcaattaagtccctcaccggt 14166914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 6473 - 6547
Alignment:
Q  13 tagggtgggggttcaattaagtccctcaccggtggatcatc-ttaacaataattaagaatcatttgattaatcaa 86  Q
    ||||||| ||||||||||||||||||||||| |||| || | | |||||||||| ||| |||||  |||||||||    
T  6473 tagggtgagggttcaattaagtccctcaccgatggaccaccatgaacaataattgagagtcattaaattaatcaa 6547  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 6873526 - 6873564
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtg 46  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  6873526 gattttagggtgagggttcaattaagtcccttaccggtg 6873564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 20606960 - 20606886
Alignment:
Q  13 tagggtgggggttcaattaagtccctcaccggtggatca-tcttaacaataattaagaatcatttgattaatcaa 86  Q
    ||||||| |||||||||||||||||||||||||| | || | | ||||||||||||||  |||| ||| ||||||    
T  20606960 tagggtgagggttcaattaagtccctcaccggtgaaccactataaacaataattaagagccattagatcaatcaa 20606886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 20606290 - 20606330
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtgga 48  Q
    |||||||||||| ||||| ||||||||||||||||| ||||    
T  20606290 gattttagggtgagggtttaattaagtccctcaccgatgga 20606330  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 20476160 - 20476123
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggt 45  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  20476160 gattttagggtgagggatcaattaagtccctcaccggt 20476123  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 23258011 - 23257912
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtggatcatcttaacaataattaagaatcatttgattaatcaaatacacaattcttattataca 107  Q
    |||||||||||| ||| |||||||| || ||||| |||| | | | | || ||||||||| | ||||| |||||||||| ||||||  ||||||||||||    
T  23258011 gattttagggtgagggatcaattaaatctctcactggtgaacc-tgtgaataataattaaaagtcattagattaatcaagtacacatatcttattataca 23257913  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 24565577 - 24565617
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtgga 48  Q
    |||| ||||||| |||||||||||| |||||||||||||||    
T  24565577 gattctagggtgagggttcaattaaatccctcaccggtgga 24565617  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 24606613 - 24606653
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtgga 48  Q
    |||| ||||||| |||||||||||| |||||||||||||||    
T  24606613 gattctagggtgagggttcaattaaatccctcaccggtgga 24606653  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 39937950 - 39937910
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtgga 48  Q
    |||| ||||||| ||||||| ||||||||||||||||||||    
T  39937950 gattctagggtgagggttcagttaagtccctcaccggtgga 39937910  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 40372204 - 40372164
Alignment:
Q  8 gattttagggtgggggttcaattaagtccctcaccggtgga 48  Q
    |||| ||||||| |||||||||||||| |||||||||||||    
T  40372204 gattctagggtgagggttcaattaagttcctcaccggtgga 40372164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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