View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2172R-Insertion-1 (Length: 1067)

Name: NF2172R-Insertion-1
Description: NF2172R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2172R-Insertion-1
NF2172R-Insertion-1
[»] chr8 (13 HSPs)
chr8 (639-1016)||(42664733-42665116)
chr8 (304-597)||(42664399-42664692)
chr8 (93-299)||(42664121-42664327)
chr8 (100-250)||(33828238-33828389)
chr8 (103-260)||(16366771-16366929)
chr8 (326-551)||(9929403-9929624)
chr8 (98-262)||(25246940-25247102)
chr8 (93-262)||(41877437-41877608)
chr8 (639-713)||(9929241-9929315)
chr8 (96-250)||(10207926-10208074)
chr8 (93-262)||(29191065-29191236)
chr8 (158-200)||(5697328-5697370)
chr8 (184-262)||(26534397-26534476)
[»] chr5 (6 HSPs)
chr5 (93-262)||(29790589-29790757)
chr5 (93-262)||(35951896-35952067)
chr5 (100-262)||(14144862-14145028)
chr5 (100-262)||(15471053-15471216)
chr5 (639-713)||(15561451-15561525)
chr5 (225-262)||(33140407-33140444)
[»] chr2 (9 HSPs)
chr2 (93-262)||(43559646-43559816)
chr2 (99-210)||(33226606-33226717)
chr2 (100-262)||(19865891-19866052)
chr2 (100-262)||(19870792-19870953)
chr2 (100-262)||(19875693-19875854)
chr2 (100-262)||(18061103-18061266)
chr2 (102-262)||(45040055-45040215)
chr2 (100-262)||(29686115-29686277)
chr2 (100-170)||(21017197-21017267)
[»] chr1 (4 HSPs)
chr1 (93-266)||(44508189-44508363)
chr1 (98-193)||(41335963-41336058)
chr1 (100-262)||(31067062-31067223)
chr1 (152-250)||(7093556-7093654)
[»] chr4 (8 HSPs)
chr4 (101-246)||(35466444-35466591)
chr4 (99-262)||(47668882-47669046)
chr4 (98-262)||(55250464-55250629)
chr4 (93-250)||(20447736-20447893)
chr4 (100-262)||(1101062-1101224)
chr4 (100-262)||(29857378-29857541)
chr4 (639-735)||(6056932-6057028)
chr4 (104-181)||(46964057-46964134)
[»] chr3 (11 HSPs)
chr3 (98-262)||(39650427-39650592)
chr3 (93-262)||(45483737-45483904)
chr3 (318-551)||(27982637-27982868)
chr3 (115-262)||(33087858-33088005)
chr3 (99-244)||(28521495-28521641)
chr3 (98-262)||(26445938-26446103)
chr3 (99-200)||(28050706-28050807)
chr3 (100-262)||(46091784-46091948)
chr3 (98-143)||(49754276-49754321)
chr3 (99-211)||(28146763-28146877)
chr3 (225-262)||(570960-570997)
[»] chr6 (4 HSPs)
chr6 (98-262)||(20921336-20921503)
chr6 (98-156)||(20902845-20902903)
chr6 (103-199)||(4017129-4017225)
chr6 (642-720)||(14050891-14050966)
[»] scaffold0005 (1 HSPs)
scaffold0005 (100-262)||(270258-270420)
[»] chr7 (5 HSPs)
chr7 (326-551)||(37783104-37783326)
chr7 (103-262)||(19910119-19910276)
chr7 (98-262)||(47235893-47236055)
chr7 (639-713)||(37783414-37783488)
chr7 (99-137)||(34821084-34821122)
[»] scaffold0257 (1 HSPs)
scaffold0257 (99-250)||(16433-16585)


Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 639 - 1016
Target Start/End: Original strand, 42664733 - 42665116
Alignment:
Q  639 gtgtgatctagtgtgtaatatcatatatgaatttgatcaatctaatgactctcgatggttgttcgaagtggtccatcgatgaaggatttaatagaacact 738  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||| ||    
T  42664733 gtgtgatctagtgtgtaatatcatatatgaatttgatcaatctaatgactctcgatggttgttcgaagtggtccaccgacgagggacttaatagaaccct 42664832  T
Q  739 tcccataaaattcaccgataaaactacatacataaaattaaagagcaatgatttattttttatacaactaccaacaccatgttgctttctgcaagagagg 838  Q
     ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42664833 ccccttaaaattcaccaataaaactacatacataaaattaaagagcaatgatttattttttatacaactaccaacaccatgttgctttctgcaagagagg 42664932  T
Q  839 agtgaagagaatgttgttgttttcctcataagaattgaaaatcatgtttgcaaactcttccgaag-aaatttgccgtacttatgctcatctttcttgaca 937  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||    
T  42664933 agtgaagagaatgttgttgttttcctcgtaagaattgaaaatcatgtttgcaaactcctccaaagaaaatttgccgtacttatgctcatctttcttgaca 42665032  T
Q  938 tgcttcac-atttctctgaaaaaagttatttcacaagggaga--ccaacaa-ccttaacaccaaggcc-aactcctcctcagat 1016  Q
    |||||||| |||||||||||||||||||||||||||||||||  | ||||| |||||||||||||||| |||||||||||||||    
T  42665033 tgcttcacaatttctctgaaaaaagttatttcacaagggagaaccaaacaacccttaacaccaaggccaaactcctcctcagat 42665116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 304 - 597
Target Start/End: Original strand, 42664399 - 42664692
Alignment:
Q  304 gggaatcgcccctgatcacgtcaccccttaatttcatccaatctttagaaacacttctctcctaaagattcattaaaagatatatttatagcacgatccc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  42664399 gggaatcgcccctgatcacgtcaccccttaatttcatccaatctttagaaacacttctctcctaaagattcattaaaagatatatttatagcaggatcct 42664498  T
Q  404 ttgatttcaaacattctagcaataatttgttaattnnnnnnnnntgaaactttcatctttataatttcaacaacgaaaaatatgagtggaagaattttca 503  Q
    |||||||||| |||||||||||| |||||||||||         |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  42664499 ttgatttcaaccattctagcaatgatttgttaattaaaaaaaaatgaaacttccatctttataatttcaacaacgaaaaaaatgagtggaagaattttca 42664598  T
Q  504 gataggatttgtgaggacggcagtggagttttgaggacagcggttttcttggacgcgcaacctttcttgcgttcatgaacaacatggaaggaag 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42664599 gataggatttgtgaggacggcagtggagttttgaggacagcggttttcttggacgtgcaacctttcttgcgttcatgaacaacatggaaggaag 42664692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 93 - 299
Target Start/End: Original strand, 42664121 - 42664327
Alignment:
Q  93 gacagcgaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaa 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||    
T  42664121 gacagcgaagaaaataaaatctaacaataattatttataaaagttgtactctatgaagttttaaaaagtcaaatttatttataattgacactaaactaaa 42664220  T
Q  193 tagattataagtattttttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataatacattcaatactatactaattatgcaagatt 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  42664221 tagattataagtattttttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataatacatttaatactataccaattatgcaagatt 42664320  T
Q  293 tattgct 299  Q
    |||||||    
T  42664321 tattgct 42664327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 100 - 250
Target Start/End: Complemental strand, 33828389 - 33828238
Alignment:
Q  100 aagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatta 199  Q
    |||||||||||| ||||||||| ||||||||||||||||  ||||| | || ||| | |||||||||||||  ||||||||||||||| |||||||||||    
T  33828389 aagaaaataaaagctaacaatagttatttataaaagttgagctctaaggagtttttagaagtcaaatttatccataattgacactaaactaaatagatta 33828290  T
Q  200 taagtattttt-taaaatcaccactttttaaaccaacaaaattgtttggagt 250  Q
    | | ||||||| ||| |||| |  | ||| ||||||||||||||||||||||    
T  33828289 tcaatatttttataatatcatctttattttaaccaacaaaattgtttggagt 33828238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 103 - 260
Target Start/End: Original strand, 16366771 - 16366929
Alignment:
Q  103 aaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagattataa 202  Q
    |||||||||  |||||||| ||||||||||||||||  | ||| | || ||| |||| |||||||||| ||||||| |||||||| |||||||||||| |    
T  16366771 aaaataaaagataacaatagttatttataaaagttgagccctaagaagtttttaaaattcaaatttatctataattaacactaaactaaatagattatca 16366870  T
Q  203 gtattttt-taaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataa 260  Q
     ||||||| ||| |||| | || ||| |||||||||||||||||||||| | |||||||    
T  16366871 atatttttataatatcatctctattttaaccaacaaaattgtttggagtagtcaaataa 16366929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 326 - 551
Target Start/End: Complemental strand, 9929624 - 9929403
Alignment:
Q  326 accccttaatttcatccaatctttagaaacacttctctcctaaagattcattaaaagatatatttatagcacgatccc-ttgatttcaaacattctagca 424  Q
    ||||||| |||| |||||||||| |||| |||||||| | ||||||||||||||||||||||||||||||| |||||| ||| |||||  ||||||||||    
T  9929624 accccttgatttaatccaatctt-agaa-cacttctcacgtaaagattcattaaaagatatatttatagcatgatccctttgttttcatccattctagca 9929527  T
Q  425 ataatttgttaattnnnnnnnnntgaaactttcatctttataatttcaacaacgaaaaatatgagtggaagaattttcagataggatttgtgaggacggc 524  Q
    ||  || |||||||         |||||||| |||||||||||||  |||   || ||||||||| |||| ||| || ||||||||| |||||| |||      
T  9929526 attgttcgttaatt--caaaaaatgaaacttccatctttataattaaaaccgagacaaatatgagaggaataatctt-agataggatatgtgagaacgtt 9929430  T
Q  525 agtggagttttgaggacagcggttttc 551  Q
    ||||||| |||| ||||||| ||||||    
T  9929429 agtggaggtttgtggacagcagttttc 9929403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 25246940 - 25247102
Alignment:
Q  98 cgaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagat 197  Q
    |||||||||||||| ||||| ||  |||||| |||||| ||   |||||| || ||||| ||| ||||||||| |||||||||||||||| |||||| ||    
T  25246940 cgaagaaaataaaagctaactat--ttatttgtaaaagatgagttctatggagttttaagaagacaaatttatctataattgacactaaactaaatatat 25247037  T
Q  198 tataagtattttttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    ||| | | ||| |||| || |   || |||||| ||||||||||||||||||| |||||||||||    
T  25247038 tatcaatttttgttaatataatatctctttaaatcaacaaaattgtttggagtagccaaataata 25247102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 93 - 262
Target Start/End: Complemental strand, 41877608 - 41877437
Alignment:
Q  93 gacagcgaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatt--tatttataattgacactaaatta 190  Q
    |||| |||||||| || |||||||||||||||||||||||||||||   | |||  || ||||| ||||||||||  ||| |||| |||||| |||| ||    
T  41877608 gacaacgaagaaactataatctaacaataattatttataaaagttgagttttatcaagttttaagaagtcaaatttatatatatacttgacattaaacta 41877509  T
Q  191 aatagattataagtatttt-ttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    |||| ||||| | |||||| |||| |||  | |||||| |||||||||||||||||||||| ||||| |||||    
T  41877508 aataaattattaatattttattaagatcgtctcttttt-aaccaacaaaattgtttggagtagccaagtaata 41877437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 639 - 713
Target Start/End: Complemental strand, 9929315 - 9929241
Alignment:
Q  639 gtgtgatctagtgtgtaatatcatatatgaatttgatcaatctaatgactctcgatggttgttcgaagtggtcca 713  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||| || |||| || ||||||| ||||||||||    
T  9929315 gtgtgatctactgtataatatcatatatgaacttgatcaatctaacgattctcaatagttgttccaagtggtcca 9929241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 250
Target Start/End: Original strand, 10207926 - 10208074
Alignment:
Q  96 agcgaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatag 195  Q
    ||||||| |||||||||||||||||||||||||| |||||||   | ||||| || ||||| |||||||    ||||||||||| ||| ||| ||||||     
T  10207926 agcgaagcaaataaaatctaacaataattatttaaaaaagttaagccctatgaagttttaagaagtcaa----atttataattggcacaaaactaaataa 10208021  T
Q  196 attataagtattttttaaaatcaccactttttaaaccaacaaaattgtttggagt 250  Q
    ||||| |  || |||||| |  | | || ||||||||||||||||||||||||||    
T  10208022 attatca--atattttaatagtatctctctttaaaccaacaaaattgtttggagt 10208074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 262
Target Start/End: Original strand, 29191065 - 29191236
Alignment:
Q  93 gacagcgaagaaaataaaatctaa-caataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaa 191  Q
    |||| ||||||||||||||  ||| ||||| ||| ||||||||||||  || |||  || | ||| || | ||||||||  ||||||||||| ||| |||    
T  29191065 gacaacgaagaaaataaaagttaaacaatagttagttataaaagttgagctttatagagttgtaagaacttaaatttatccataattgacaccaaactaa 29191164  T
Q  192 atagattataagtattttttaaa-atcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    ||| | ||| | ||||| |  || |||| | ||||||||||||||||||||||||||||| | |||||||||    
T  29191165 atatactatcaatatttgtgcaatatcatctctttttaaaccaacaaaattgtttggagtaggcaaataata 29191236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 5697328 - 5697370
Alignment:
Q  158 aagtcaaatttatttataattgacactaaattaaatagattat 200  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  5697328 aagtcaaatttatttataattgacactatattaaataaattat 5697370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 26534476 - 26534397
Alignment:
Q  184 taaattaaatagattataagtattttt-taaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    |||| |||||||||||| | ||||||| ||| | || | || ||| ||||||||||||||||||||||| ||||||||||    
T  26534476 taaactaaatagattatcaatatttttataataccatctctattttaaccaacaaaattgtttggagtgaccaaataata 26534397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 2e-64; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 93 - 262
Target Start/End: Complemental strand, 29790757 - 29790589
Alignment:
Q  93 gacagcgaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaa 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |||||||||||| ||||||||||||||| | ||||    
T  29790757 gacagcgaagaaaataaaatctaacaataattatttataaaagttgtactttatgaagttttaacaagtcaaatttacttataattgacactagactaaa 29790658  T
Q  193 tagattataagtattttttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  29790657 tagattataagtat-ttttaaaatcatctctttttaaaccaacaaaattgtttggagtggccaaataata 29790589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 93 - 262
Target Start/End: Original strand, 35951896 - 35952067
Alignment:
Q  93 gacagcgaagaaaataaaatctaa-caataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaa 191  Q
    |||| ||||||||||||||  ||| ||||| ||||||||||||||||  || |||  || | ||| || | ||||||||  ||||||||||||||| |||    
T  35951896 gacaacgaagaaaataaaagttaaacaatagttatttataaaagttgagctttatagagttgtaagaactaaaatttatccataattgacactaaactaa 35951995  T
Q  192 atagattataagtattttttaaa-atcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    ||| ||||| | ||||| || || |||| | ||||||||||||||||||||||||||||| |||||||||||    
T  35951996 atatattatcaatatttgttcaatatcatctctttttaaaccaacaaaattgtttggagtagccaaataata 35952067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 14144862 - 14145028
Alignment:
Q  100 aagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttat---ttataattgacactaaattaaataga 196  Q
    |||||||||||| ||||||||| |||||||||||||||   ||||| | || ||| | | |||||||||||   | || |||||||||||| ||||||||    
T  14144862 aagaaaataaaagctaacaatacttatttataaaagttaagctctaaggagtttttagaggtcaaatttatccataattattgacactaaactaaataga 14144961  T
Q  197 ttataagtattttt-taaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    |||| | ||||||| ||| |||| |  | ||| ||||||||||||| |||||||||| |||||||||    
T  14144962 ttatcaatatttttataatatcatctatgttttaaccaacaaaattatttggagtggtcaaataata 14145028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 15471053 - 15471216
Alignment:
Q  100 aagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatta 199  Q
    ||||||| ||||  ||||| || ||||||||||||||||  |||||   || ||| | || ||||||||||  ||||||||||||||| |||||||||||    
T  15471053 aagaaaagaaaagttaacattagttatttataaaagttgagctctaatgagtttttagaattcaaatttatccataattgacactaaactaaatagatta 15471152  T
Q  200 taagtattttt-taaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    | | ||||||| ||  |||| | || ||| ||||||||||||||||||||||  ||||||||||    
T  15471153 tcaatatttttgtattatcatctctgttttaaccaacaaaattgtttggagtaaccaaataata 15471216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 639 - 713
Target Start/End: Complemental strand, 15561525 - 15561451
Alignment:
Q  639 gtgtgatctagtgtgtaatatcatatatgaatttgatcaatctaatgactctcgatggttgttcgaagtggtcca 713  Q
    |||||||||||||| ||||||||||| |||| ||||| |||||||||  |||| ||||||||||||| |||||||    
T  15561525 gtgtgatctagtgtataatatcatatgtgaacttgattaatctaatggttctcaatggttgttcgaaatggtcca 15561451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 33140407 - 33140444
Alignment:
Q  225 tttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  33140407 tttaaaccaataaaattgtttggagtagccaaataata 33140444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 2e-55; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 93 - 262
Target Start/End: Complemental strand, 43559816 - 43559646
Alignment:
Q  93 gacagcgaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaa 192  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||| |||     
T  43559816 gacaacgaagaaaataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtcaaatttatttataattgacactaaactaag 43559717  T
Q  193 tagattataagtatt-ttttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    ||||||||||||||| ||||||||| | | || |||||||||||||||||||||||||| |||||||||||    
T  43559716 tagattataagtatttttttaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataata 43559646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 33226606 - 33226717
Alignment:
Q  99 gaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  33226606 gaagaaaataaaatctaacaataattatttataaaagttgtactctatgaagttttaacaagtcaaatttatttataattgacactaaactaaatagatt 33226705  T
Q  199 ataagtattttt 210  Q
    ||||||||||||    
T  33226706 ataagtattttt 33226717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 19866052 - 19865891
Alignment:
Q  100 aagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatta 199  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| || |||   ||||||||||||| ||||||||| |||||| |||||||||||    
T  19866052 aagaaaataaaatctaacaataattatttataaaagttgtgctctatgaagtttt---aagtcaaatttatctataattgatactaaactaaatagatta 19865956  T
Q  200 taagtatttt-ttaaaatcaccactttttaaaccaac-aaaattgtttggagtggccaaataata 262  Q
    |   |||||| || | |||| |  | ||||||||||| ||||||||||||||| |||||||||||    
T  19865955 tctatattttattgatatcatccttctttaaaccaacaaaaattgtttggagtagccaaataata 19865891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 19870953 - 19870792
Alignment:
Q  100 aagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatta 199  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| || |||   ||||||||||||| ||||||||| |||||| |||||||||||    
T  19870953 aagaaaataaaatctaacaataattatttataaaagttgtgctctatgaagtttt---aagtcaaatttatctataattgatactaaactaaatagatta 19870857  T
Q  200 taagtatttt-ttaaaatcaccactttttaaaccaac-aaaattgtttggagtggccaaataata 262  Q
    |   |||||| || | |||| |  | ||||||||||| ||||||||||||||| |||||||||||    
T  19870856 tctatattttattgatatcatccttctttaaaccaacaaaaattgtttggagtagccaaataata 19870792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 19875854 - 19875693
Alignment:
Q  100 aagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatta 199  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| || |||   ||||||||||||| ||||||||| |||||| |||||||||||    
T  19875854 aagaaaataaaatctaacaataattatttataaaagttgtgctctatgaagtttt---aagtcaaatttatctataattgatactaaactaaatagatta 19875758  T
Q  200 taagtatttt-ttaaaatcaccactttttaaaccaac-aaaattgtttggagtggccaaataata 262  Q
    |   |||||| || | |||| |  | ||||||||||| ||||||||||||||| |||||||||||    
T  19875757 tctatattttattgatatcatccttctttaaaccaacaaaaattgtttggagtagccaaataata 19875693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 18061103 - 18061266
Alignment:
Q  100 aagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatta 199  Q
    ||||||| |||| ||||||||| |||||||||||| |||  || |||  || ||||| |||||||||||||| ||||| ||||||||| |||||||||||    
T  18061103 aagaaaacaaaagctaacaatagttatttataaaatttgagctatatagagttttaagaagtcaaatttattcataatggacactaaactaaatagatta 18061202  T
Q  200 taagtatt-ttttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    | | |||| |||||| | || | || ||| ||||||| ||||||||||||||  ||||||||||    
T  18061203 ttaatattattttaatagcatctctctttgaaccaaccaaattgtttggagtaaccaaataata 18061266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 45040055 - 45040215
Alignment:
Q  102 gaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagattata 201  Q
    ||||||||||  |||||||| |||||| |||||  ||  ||||||| || ||||| ||| ||||||||| ||||||||| |||||| ||||||||||||     
T  45040055 gaaaataaaaggtaacaatagttatttgtaaaatatgagctctatggagttttaagaagacaaatttatctataattgatactaaactaaatagattatc 45040154  T
Q  202 agtattttttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    | | ||| |||| || |   || ||| || |||||||||||||||||||| | ||||||||    
T  45040155 aatttttgttaatataatatctctttgaaacaacaaaattgtttggagtgactaaataata 45040215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 29686115 - 29686277
Alignment:
Q  100 aagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatta 199  Q
    ||||||||||| | |||||||| ||| ||||||||||||  || ||   || ||| | ||||||| |||||  ||||||||||||||| |||||||||||    
T  29686115 aagaaaataaagt-taacaatagttacttataaaagttgacctttaaagagtttttagaagtcaattttatccataattgacactaaaataaatagatta 29686213  T
Q  200 taagtattttt-taaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    | | ||||||| ||  |||| | || ||| ||||||||||||| |||| |||| ||||||||||    
T  29686214 tcaatatttttatagtatcatctctgttttaaccaacaaaattatttgaagtgaccaaataata 29686277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 21017197 - 21017267
Alignment:
Q  100 aagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttat 170  Q
    |||||||||||| ||||||||| ||||||||||||||||   | |||| || ||||| |||||||||||||    
T  21017197 aagaaaataaaagctaacaatagttatttataaaagttgagatatatggagttttaagaagtcaaatttat 21017267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 93 - 266
Target Start/End: Original strand, 44508189 - 44508363
Alignment:
Q  93 gacagcgaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaa 192  Q
    |||| |||||||| |||||||| | |||||||||||||||||||||  ||||||  || ||||| ||||||||||||| |||||||||||||||||||||    
T  44508189 gacaacgaagaaactaaaatctgaaaataattatttataaaagttgagctctataaagttttaagaagtcaaatttatctataattgacactaaattaaa 44508288  T
Q  193 tagattataagtatttt-ttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataatacatt 266  Q
    |||||||| | |||||| |||| |||| | || |||||||||| ||||||||||| ||| ||  |||||||||||    
T  44508289 tagattatcaatattttattaacatcatccctctttaaaccaataaaattgtttgaagtagctgaataatacatt 44508363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 41336058 - 41335963
Alignment:
Q  98 cgaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaat 193  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||| |  ||||| || ||||||||||||||||||||||||||| |||||    
T  41336058 cgaagaaaataaaatctaacaataattatgtataaaagttgaactctatgaacttttaacaaatcaaatttatttataattgacactaaactaaat 41335963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 31067062 - 31067223
Alignment:
Q  100 aagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatta 199  Q
    |||||||||||| |||||||||||||||| |||||||||  ||||| | || ||| | ||||||||  |||  ||||||||||||||||||||| |||||    
T  31067062 aagaaaataaaaactaacaataattatttttaaaagttgagctctaaggagtttttagaagtcaaa--tatccataattgacactaaattaaattgatta 31067159  T
Q  200 taagtattttt-taaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    | | | ||||| ||| || | | || ||| |||||| |||||||||| ||||||||||||||||    
T  31067160 tcaatgtttttataatattatctctgttttaaccaataaaattgtttagagtggccaaataata 31067223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 7093654 - 7093556
Alignment:
Q  152 tttaaaaagtcaaatttatttataattgacactaaattaaatagattataagtattttttaaaatcaccactttttaaaccaacaaaattgtttggagt 250  Q
    ||||| ||| |||||||||  ||||||||||||||| |||||||||||| | ||||| || | |||| | || ||| ||||||||||||||||||||||    
T  7093654 tttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttcttgatatcatctctgtttgaaccaacaaaattgtttggagt 7093556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 8e-33; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 101 - 246
Target Start/End: Complemental strand, 35466591 - 35466444
Alignment:
Q  101 agaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagattat 200  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||  || |  || ||||||||||||||| |||||||||||||| ||||||||||||    
T  35466591 agaaaataaaatcgaacaataattattcataaaagttgtactctataaagttaaaacaagtcaaatttatttctaattgacactaaactaaatagattat 35466492  T
Q  201 aagtattt--tttaaaatcaccactttttaaaccaacaaaattgtttg 246  Q
    ||||||||  || ||||||| |  | |||||||||||||||| |||||    
T  35466491 aagtattttattaaaaatcatctttctttaaaccaacaaaatcgtttg 35466444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 99 - 262
Target Start/End: Original strand, 47668882 - 47669046
Alignment:
Q  99 gaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatt 198  Q
    ||||||| ||||||||||| || ||||||||||||||||| |||||||  || ||||| || |||||||||| |||||||||||||||||||||||||||    
T  47668882 gaagaaactaaaatctaacgatgattatttataaaagttgaactctataaagttttaagaaatcaaatttatctataattgacactaaattaaatagatt 47668981  T
Q  199 ataagtatttt-ttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    || | |||||| |||| || | |  | |||||||||||||||||||| ||||| | |||||||||    
T  47668982 atcaatattttattaacattatccatctttaaaccaacaaaattgttcggagtagtcaaataata 47669046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 55250629 - 55250464
Alignment:
Q  98 cgaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagat 197  Q
    |||||||| |||||||||||||||||||||||| |||||||  || |||  |  ||||| ||||||||||||| |||||||||||||||| |||||||||    
T  55250629 cgaagaaactaaaatctaacaataattatttattaaagttgagctatataaaattttaagaagtcaaatttatctataattgacactaaactaaatagat 55250530  T
Q  198 tataagtatttt-ttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    ||| | |||||| |||| || | | || ||| |||||||||||||||||| ||| | |||||||||    
T  55250529 tatcaatattttattaacattatccctctttgaaccaacaaaattgtttgaagtagtcaaataata 55250464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 93 - 250
Target Start/End: Original strand, 20447736 - 20447893
Alignment:
Q  93 gacagcgaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaa 192  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||  |||||||  | | ||| ||||||||||||| | ||||||||||||| |||||    
T  20447736 gacaacgaagaaactaaaatctaacaataattatttataaaagttgagctctatgatgttgtaagaagtcaaatttatctttaattgacactaacttaaa 20447835  T
Q  193 tagattataagtatttt-ttaaaatcaccactttttaaaccaacaaaattgtttggagt 250  Q
    ||||| || | |||||| |||| |||| | || ||| || |||||||||||||| ||||    
T  20447836 tagatcatca-tattttattaacatcatccctctttcaatcaacaaaattgtttagagt 20447893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 1101062 - 1101224
Alignment:
Q  100 aagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatta 199  Q
    |||||||||||| ||| ||||| |||||| |||||| ||  ||||||  || ||||| ||| ||||||||| |||| ||||||||||| |||||||||||    
T  1101062 aagaaaataaaagctaccaatagttatttgtaaaagatgagctctattgagttttaagaagacaaatttatctatagttgacactaaactaaatagatta 1101161  T
Q  200 taagtattttttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    | | | ||| |||| || |   || ||| ||||||| |||||||||||||| |||||||||||    
T  1101162 tcaatttttgttaatataatatctctttgaaccaactaaattgtttggagtagccaaataata 1101224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 29857378 - 29857541
Alignment:
Q  100 aagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatta 199  Q
    ||||||||||||  |||||||| ||| ||||||||||||  || ||   || ||| | ||||||| |||||  |||||| |||||||| |||||||||||    
T  29857378 aagaaaataaaagttaacaatagttacttataaaagttgagctttaaagagtttttagaagtcaattttatccataattaacactaaactaaatagatta 29857477  T
Q  200 taagtattttt-taaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    | | ||||||| || ||||| | || ||| ||||||||||||| ||||||||||||| ||||||    
T  29857478 tcaatatttttatagaatcatctctgttttaaccaacaaaattatttggagtggccagataata 29857541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 639 - 735
Target Start/End: Original strand, 6056932 - 6057028
Alignment:
Q  639 gtgtgatctagtgtgtaatatcatatatgaatttgatcaatctaatgactctcgatggttgttcgaagtggtccatcgatgaaggatttaatagaac 735  Q
    |||||||||||||| ||||||||||| |||| ||||| ||| |||||  |||  ||||||||||||||||||||| || ||| ||| ||| ||||||    
T  6056932 gtgtgatctagtgtataatatcatatgtgaacttgattaatttaatggttcttaatggttgttcgaagtggtccaccggtgagggacttagtagaac 6057028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 46964134 - 46964057
Alignment:
Q  104 aaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgac 181  Q
    |||||||| | || ||||||| |||||||||||||  ||| ||| || ||||| |||||||||||||  |||||||||    
T  46964134 aaataaaaacaaaaaataattttttataaaagttgagctcgatggagttttaagaagtcaaatttatccataattgac 46964057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 5e-31; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 39650592 - 39650427
Alignment:
Q  98 cgaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagat 197  Q
    |||||||| |||||||||||||  ||| ||||||||||||| ||||| |  || ||||| |||||||||| || |||||||||| |||||||||||||||    
T  39650592 cgaagaaactaaaatctaacaaagattgtttataaaagttgaactctgtaaagttttaagaagtcaaattcatctataattgacgctaaattaaatagat 39650493  T
Q  198 tataagtatttt-ttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    ||| | |||||| |||| || | | || |||||||||||||||||||||||||| ||||| |||||    
T  39650492 tatcaatattttattaatattatccctctttaaaccaacaaaattgtttggagtagccaagtaata 39650427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 93 - 262
Target Start/End: Original strand, 45483737 - 45483904
Alignment:
Q  93 gacagcgaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaa 192  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || |||   ||||| ||||||| ||||||||| |||||| ||||    
T  45483737 gacagcaaagaaaataaaatctaacaataattatttataaaagttgtgctctatgaagtttt---aagtc-aatttatctataattgatactaaactaaa 45483832  T
Q  193 tagattataagtatttt-ttaaaatcaccactttttaaaccaac-aaaattgtttggagtggccaaataata 262  Q
    ||||||||   |||||| || | |||| | || ||||||||||| ||||||||||||||| |||||||||||    
T  45483833 tagattatctatattttattgatatcatccctctttaaaccaacaaaaattgtttggagtagccaaataata 45483904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 318 - 551
Target Start/End: Original strand, 27982637 - 27982868
Alignment:
Q  318 atcacgtcaccccttaatttcatccaatctttagaaacacttctctcctaaagattcattaaaagatatatttatagcacgatccc-ttgatttcaaaca 416  Q
    ||||| ||||||||| |||| ||||||||||  ||| |||||||| | ||||||||||||||||||||||||||||||| |||||| ||| |||||  ||    
T  27982637 atcacttcaccccttgatttaatccaatcttcggaa-cacttctcacgtaaagattcattaaaagatatatttatagcatgatccctttgttttcatcca 27982735  T
Q  417 ttctagcaataatttgttaattnnnnnnnnntgaaactttcatctttataatttcaacaacgaaaaatatgagtggaagaattttcagataggatttgtg 516  Q
    ||||||||||  ||||||| ||         |||||||| |||||||||||||  |||   || ||||||||| |||| ||| |||||||||||| ||||    
T  27982736 ttctagcaattgtttgttagtt--aaaaaaatgaaacttccatctttataattaaaaccgagacaaatatgagaggaataatcttcagataggatatgtg 27982833  T
Q  517 aggacggcagtggagttttgaggacagcggttttc 551  Q
    || |||| ||||||| |||| ||||| | ||||||    
T  27982834 agaacggtagtggaggtttgtggacaacagttttc 27982868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 115 - 262
Target Start/End: Original strand, 33087858 - 33088005
Alignment:
Q  115 aacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagattataagtatttt-ttaa 213  Q
    ||||||||||||||||||||||||  || |||| || ||||| ||||||| ||||| |||||||||||||||| |||||||||||| | |||||| ||||    
T  33087858 aacaataattatttataaaagttgagctttatgaagttttaagaagtcaa-tttatctataattgacactaaactaaatagattatcaatattttattaa 33087956  T
Q  214 aatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
     ||||||  | ||| ||| |||||||||||||| ||  |||||||||||    
T  33087957 tatcacccttctttgaactaacaaaattgtttgaagaagccaaataata 33088005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 99 - 244
Target Start/End: Complemental strand, 28521641 - 28521495
Alignment:
Q  99 gaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatt 198  Q
    ||||||||||||| ||||||||| |||| || |||| |||  ||||||| |  ||||| |||||||||||||| |||||||| |||||| ||||||||||    
T  28521641 gaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaaattttaagaagtcaaatttattcataattgatactaaactaaatagatt 28521542  T
Q  199 ataagtatt-ttttaaaatcaccactttttaaaccaacaaaattgtt 244  Q
    || | |||| || ||| || | | || ||||||||||||||||||||    
T  28521541 atcaatattattataatattatctctctttaaaccaacaaaattgtt 28521495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 26446103 - 26445938
Alignment:
Q  98 cgaagaaaataaaatctaa-caataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaataga 196  Q
    ||||||||||||||  ||| ||||||||||||||||||||||  || |||  || | ||| || | ||||||||  ||||||||||| ||| |||||| |    
T  26446103 cgaagaaaataaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaacttaaatttatccataattgacaccaaactaaatata 26446004  T
Q  197 ttataagtattttttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    |||| | ||||| |  ||   | | ||||||||||||||||||||||||||||| |||| ||||||    
T  26446003 ttatcaatatttgtgcaatatatctctttttaaaccaacaaaattgtttggagtagccagataata 26445938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 200
Target Start/End: Original strand, 28050706 - 28050807
Alignment:
Q  99 gaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatt 198  Q
    ||||||||||||| ||| ||||| |||| |||||||||||   |||||| |||||||| || | |||||||| |||||| |||| |||| ||||||||||    
T  28050706 gaagaaaataaaagctaccaatagttatctataaaagttgagttctatgaagatttaagaaattaaatttatctataatagacattaaactaaatagatt 28050805  T
Q  199 at 200  Q
    ||    
T  28050806 at 28050807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 46091784 - 46091948
Alignment:
Q  100 aagaaaataaaat-ctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatt 198  Q
    ||||||||||||  ||||||||| ||||||||||| ||||  ||||| | ||  || | |||||||||||||  |||||| |||||||| ||||| ||||    
T  46091784 aagaaaataaaaagctaacaatagttatttataaatgttgagctctaaggagtatttagaagtcaaatttatccataattaacactaaactaaatggatt 46091883  T
Q  199 ataagtattttt-taaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    || | ||||||| ||| || | |  | ||| |||||| ||||||||||||||| |||||||||||    
T  46091884 atcaatatttttataatattatctatgttttaaccaataaaattgtttggagtagccaaataata 46091948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 49754321 - 49754276
Alignment:
Q  98 cgaagaaaataaaatctaacaataattatttataaaagttgtactc 143  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  49754321 cgaagaaaataaaatctaagaataattatttataaaagttgaactc 49754276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 28146763 - 28146877
Alignment:
Q  99 gaagaaaataaaatctaacaataattatttataaaagtt--gtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaataga 196  Q
    ||||||||||||| ||||||||| |||| ||||||| ||  || || |||| || ||| | |||||||| ||||  ||||||||||||||| ||| ||||    
T  28146763 gaagaaaataaaagctaacaatagttatctataaaatttgagttctatatgaagttttcagaagtcaaagttatccataattgacactaaactaattaga 28146862  T
Q  197 ttataagtatttttt 211  Q
     ||| | ||||||||    
T  28146863 atatcaatatttttt 28146877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 570997 - 570960
Alignment:
Q  225 tttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  570997 tttaaaccaacaaaattatttggagtagccaaataata 570960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 20921503 - 20921336
Alignment:
Q  98 cgaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagat 197  Q
    ||||||||||||||||||||||  ||||| |||| |||||| |||||||| |  |||||||| ||||||||||||||||||||||||||| |||||||||    
T  20921503 cgaagaaaataaaatctaacaaatattatgtatagaagttgaactctatgaatttttaaaaa-tcaaatttatttataattgacactaaactaaatagat 20921405  T
Q  198 tataagta-----ttttttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    | ||||||     |||||||||| || | || |||||||||||||||||||||  ||| ||||| |||||    
T  20921404 t-taagtatttttttttttaaaagcatctctatttaaaccaacaaaattgtttaaagtagccaagtaata 20921336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 20902903 - 20902845
Alignment:
Q  98 cgaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaa 156  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||    
T  20902903 cgaagaaaataaaatctaacaataattatgtataaaagttgaactctatgaagttttaa 20902845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 4017225 - 4017129
Alignment:
Q  103 aaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatta 199  Q
    |||| ||||||||| || ||||||||||||||||||   |||||  || ||| | |||||||||||||| |||||| |||||||| |||||||||||    
T  4017225 aaaaaaaaatctaaaaaaaattatttataaaagttgagttctatcgagttttcagaagtcaaatttattcataattaacactaaactaaatagatta 4017129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 642 - 720
Target Start/End: Original strand, 14050891 - 14050966
Alignment:
Q  642 tgatctagtgtgtaatatcatatatgaatttgatcaatctaatgactctcgatggttgttcgaagtggtccatcgatga 720  Q
    ||||||||||||||||| |||||||||| ||||| ||| ||||||  ||| |||||||||   ||||||||||||||||    
T  14050891 tgatctagtgtgtaatagcatatatgaacttgat-aatttaatga--ctccatggttgttgagagtggtccatcgatga 14050966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 270420 - 270258
Alignment:
Q  100 aagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatta 199  Q
    |||||||||||| |||| |||| ||||||||||||||||  ||||| | || ||| |||||||||||||||||||||||||||||||| ||| |||||||    
T  270420 aagaaaataaaagctaaaaatagttatttataaaagttgagctctaaggagtttttaaaagtcaaatttatttataattgacactaaactaagtagatta 270321  T
Q  200 taagtattttt-taaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    | | ||||||| ||| |||| | || ||| ||||||  |||||||||| ||| |||||||||||    
T  270320 tcaatatttttataatatcatctctgttttaaccaa-taaattgtttgaagtagccaaataata 270258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 326 - 551
Target Start/End: Original strand, 37783104 - 37783326
Alignment:
Q  326 accccttaatttcatccaatctttagaaacacttctctcctaaagattcattaaaagatatatttatagcacgatccc-ttgatttcaaacattctagca 424  Q
    ||||||| |||| |||||||||| || |||||||||| | ||||||||||||||||||||||||||||||| |||||| ||| |||||  ||||||||||    
T  37783104 accccttgatttaatccaatctt-aggaacacttctcacgtaaagattcattaaaagatatatttatagcatgatccctttgttttcatccattctagca 37783202  T
Q  425 ataatttgttaattnnnnnnnnntgaaactttcatctttataatttcaacaacgaaaaatatgagtggaagaattttcagataggatttgtgaggacggc 524  Q
    ||  || |||||||         |||||||| |||||||||||||  |||   || ||||||||| |||| ||| || ||||||||| |||||| ||||     
T  37783203 attgttcgttaatt--caaaaaatgaaacttccatctttataattaaaaccgagacaaatatgagaggaataatctt-agataggatatgtgagaacggt 37783299  T
Q  525 agtggagttttgaggacagcggttttc 551  Q
    ||||||| |||| ||||||| ||||||    
T  37783300 agtggaggtttgtggacagcagttttc 37783326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 103 - 262
Target Start/End: Complemental strand, 19910276 - 19910119
Alignment:
Q  103 aaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagattataa 202  Q
    ||||||||  ||||||||| ||||||||||||||||| ||||| |  | ||| | |||||||||||||  ||||   ||||||||  ||||||||||| |    
T  19910276 aaaataaacgctaacaatagttatttataaaagttgtgctctaaggtgtttttagaagtcaaatttatccataa---acactaaacaaaatagattatca 19910180  T
Q  203 gtattttt-taaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
     ||||||| ||| |||| | || ||| |||||||||||||||||||||| |||||||||||    
T  19910179 atatttttataatatcatctctgttttaaccaacaaaattgtttggagtagccaaataata 19910119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 47236055 - 47235893
Alignment:
Q  98 cgaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagat 197  Q
    |||||||||||||| ||||| ||  |||||| |||||| ||   |||||| || ||||| ||| ||||||||| |||||||||||||||| |||||||||    
T  47236055 cgaagaaaataaaagctaactat--ttatttgtaaaagatgagttctatggagttttaagaagacaaatttatctataattgacactaaactaaatagat 47235958  T
Q  198 tataagtattttttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 262  Q
    ||| | | ||| |||| || |   || |||||| ||||||||||||||||| | |||||||||||    
T  47235957 tatcaatttttgttaatataatatctctttaaatcaacaaaattgtttggaatagccaaataata 47235893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 639 - 713
Target Start/End: Original strand, 37783414 - 37783488
Alignment:
Q  639 gtgtgatctagtgtgtaatatcatatatgaatttgatcaatctaatgactctcgatggttgttcgaagtggtcca 713  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||| || |||| || ||||||| ||||||||||    
T  37783414 gtgtgatctactgtataatatcatatatgaacttgatcaatctaacgattctcaatagttgttccaagtggtcca 37783488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 34821084 - 34821122
Alignment:
Q  99 gaagaaaataaaatctaacaataattatttataaaagtt 137  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  34821084 gaagaaactaaaatctaactataattatttataaaagtt 34821122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 250
Target Start/End: Original strand, 16433 - 16585
Alignment:
Q  99 gaagaaaataaaatctaacaataattatttataaaagttgtactctatgtagatttaaaaagtcaaatttatttataattgacactaaattaaatagatt 198  Q
    ||||||||||||| |||| |||| |||| |||||||||||   | |||| |  ||||| |||||| ||||||  | |||||| |||||| |||||| |||    
T  16433 gaagaaaataaaagctaataatagttatctataaaagttgagatgtatgaat-tttaagaagtcagatttatccacaattgatactaaactaaataaatt 16531  T
Q  199 ataagtatttttt--aaaatcaccactttttaaaccaacaaaattgtttggagt 250  Q
    || | ||||||||  || |||| | || ||||||||||||||||||||||||||    
T  16532 atcaatattttttttaatatcatccctctttaaaccaacaaaattgtttggagt 16585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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