View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2172R-Insertion-2 (Length: 696)
Name: NF2172R-Insertion-2
Description: NF2172R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2172R-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 199 - 662
Target Start/End: Complemental strand, 6434640 - 6434176
Alignment:
| Q |
199 |
attcattcctactttgctcaatctcaatcggtaaattactattgtgttagttttttaaacaattcttcataaccataatttattaaccagtttaagtcaa |
298 |
Q |
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| T |
6434640 |
attcattcctactttgctcaatctcaattggtaaattactattgtgttagttttttaaacaattcttcataaccataatttattaaccagtttaagtcaa |
6434541 |
T |
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| Q |
299 |
agtagtttgtttcattatctgtactttaggacagtggtggttcatgcgtgagnnnnnnnn-gtattgcaaattgtcgtgatttgaagtaccagtacaatg |
397 |
Q |
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| T |
6434540 |
agtagtttgtttcattttctgtactttaggacagtggtggttcatccgtgagttttgttttgtattgcaaattgtcgtgatttgaagtaccagtacaatg |
6434441 |
T |
|
| Q |
398 |
atgatgttcaagaaagacatggttgtggacatacacatacgtagctctttaaagagaggctgacaaatgcttccatttggatgaaaatttatgaaatttt |
497 |
Q |
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| T |
6434440 |
atgatgttcaagaaagacatggttgtggacatacacatacgtaactctttaaagagaggctgacaaatgcttccatttggatgaaaatttatgaaatttt |
6434341 |
T |
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| Q |
498 |
gttaccaagtatagtcatgatttcagaaaaattgtcctgtgaagcaaaaaatatcgattannnnnnnacacaacttaggagccagccaatacaaatatta |
597 |
Q |
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| T |
6434340 |
gttaccaagtatagtcatgatttcagaaaatttgtcctgtgaagcaaaaattatcgattatttttttacacaacttaggagccagccaatacaaatatta |
6434241 |
T |
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| Q |
598 |
tgttttttcccttcctaaaacaaaatataatgtttttacagatacatataagttatttttcttga |
662 |
Q |
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| T |
6434240 |
tgttttttcccttcctaaaacaaaatataatgtttttacagatacatataagttatttttcttga |
6434176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 6434844 - 6434748
Alignment:
| Q |
96 |
aaaaagactttgtgctattatgaaaaataaaactccatatttatgttgggggactgtcccttttttcatttccatttacttctttcttttacccaaa |
192 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
6434844 |
aaaaagactttgtgctattttgaaaaataaaactccatatttaagttgggggactgtcccttctttcatttccatttacttctttgttttacccaaa |
6434748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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