View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2172R-Insertion-3 (Length: 558)
Name: NF2172R-Insertion-3
Description: NF2172R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2172R-Insertion-3 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 9 - 558
Target Start/End: Original strand, 43998020 - 43998569
Alignment:
| Q |
9 |
tgaactgggccaaatatttcatctttagctatcaacatatcatcctatgtaatagccactaacatgtgttagaaaatggtccacaatacacggtcttacg |
108 |
Q |
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| T |
43998020 |
tgaactgggccaaatatttcatctttagctatcaacatatcatcctatgtaatagccattaacatgtgttagaaaatggtccacaatacacggtcttacg |
43998119 |
T |
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| Q |
109 |
gtgcatttctgtaaacagtcacttgtggcaaataaccaatacctgaacatttgaaaatacagttggctggacaaagaagcctttgggacccaatctccca |
208 |
Q |
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| T |
43998120 |
gtgcatttctgtaaacagtcacttgtggcaaataatcaatacctgaacatttgaaaatacagttggctggacaaagaagcctttggaacccaatctccca |
43998219 |
T |
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| Q |
209 |
cctccacattcaagtgtagcattgctatcaattccagactttatatacctaagtactttctcaaattgtttcgaatcaatctgcgattatttgcaaggac |
308 |
Q |
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| T |
43998220 |
cctccacattcaagtgtagcattgctatcaattccagactttatatacctaagtactttctcaaattgtttcgaatcaatctgcgattatttgcaaggac |
43998319 |
T |
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| Q |
309 |
cacaaaacagtgttatgttgttaaatcatagtatgatcaagaatgtgttgttctgtcaaacattagctttttcccatgaaaaggttagtcgaataaacac |
408 |
Q |
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| T |
43998320 |
cacaaaacagtgttatgttgttaaatcatagtatgatcaagaatgtgttgttctgtcaaacattagctttttcccatgaaaaggttagtcgaataaacac |
43998419 |
T |
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| Q |
409 |
tagnnnnnnnnnnnnnnnntgagacaaggaatatagacctataaggtaacgttacaatagtaataaagttaacttaatataaaaatacctgaggaccttg |
508 |
Q |
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| T |
43998420 |
tagaaaagaaaaagaaaaatgagacaaggaatatagacctataaagtaacgttacaatagtaataaagttaacttaatataaaaatacctgaggaccttg |
43998519 |
T |
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| Q |
509 |
ctctacacccttcttaaatggatcaccgacaacacgtctcaaagctcgtt |
558 |
Q |
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| T |
43998520 |
ctctacacccttcttaaatggatcaccaacaacacgtctcaaagctcgtt |
43998569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 391
Target Start/End: Original strand, 18194813 - 18194925
Alignment:
| Q |
275 |
tgtttcgaatcaatctgcgattatttgcaaggaccacaaaacagtgttatgttgttaaatcatagtatgatcaagaatgtgttgttctgtcaaacattag |
374 |
Q |
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| T |
18194813 |
tgtttcaaatcgatctatgattttttgcaaggaccacaaaacagtgtta---tgttacattatcgtatgatcaagagtatgttgttccgtcaaacattaa |
18194909 |
T |
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| Q |
375 |
ctttttcccatgaaaag |
391 |
Q |
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| T |
18194910 |
c-ctttcccatgaaaag |
18194925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 391
Target Start/End: Complemental strand, 286233 - 286121
Alignment:
| Q |
275 |
tgtttcgaatcaatctgcgattatttgcaaggaccacaaaacagtgttatgttgttaaatcatagtatgatcaagaatgtgttgttctgtcaaacattag |
374 |
Q |
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| T |
286233 |
tgtttcaaatcgatctatgattttttgcaaggaccacaaaacagtgtta---tgttacattatcgtatgatcaagagtatgttgttccgtcaaacattaa |
286137 |
T |
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| Q |
375 |
ctttttcccatgaaaag |
391 |
Q |
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| T |
286136 |
c-ctttcccatgaaaag |
286121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 391
Target Start/End: Complemental strand, 292589 - 292477
Alignment:
| Q |
275 |
tgtttcgaatcaatctgcgattatttgcaaggaccacaaaacagtgttatgttgttaaatcatagtatgatcaagaatgtgttgttctgtcaaacattag |
374 |
Q |
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| T |
292589 |
tgtttcaaatcgatctatgattttttgcaaggaccacaaaacagtgtta---tgttacattatcgtatgatcaagagtatgttgttccgtcaaacattaa |
292493 |
T |
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| Q |
375 |
ctttttcccatgaaaag |
391 |
Q |
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| T |
292492 |
c-ctttcccatgaaaag |
292477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 494 - 553
Target Start/End: Original strand, 35210798 - 35210857
Alignment:
| Q |
494 |
tacctgaggaccttgctctacacccttcttaaatggatcaccgacaacacgtctcaaagc |
553 |
Q |
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| T |
35210798 |
tacctgaggaccttgttctacacctttcttgaatggatcgccaacaacacgtctcaaagc |
35210857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 35210314 - 35210396
Alignment:
| Q |
149 |
acctgaacatttgaaaatacagttggctggacaaagaagcctttgggacccaatctcccacctccacattcaagtgtagcatt |
231 |
Q |
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| T |
35210314 |
acctgaacatttgagaagactgttggttggacaaagaagccttttgtgccaattctgtcaccaccacattcaagagtagcatt |
35210396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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