View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2172_high_5 (Length: 251)
Name: NF2172_high_5
Description: NF2172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2172_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 13179905 - 13179827
Alignment:
| Q |
11 |
caaaggtcacaaattataacagactcggacttaataaaattgtttgtgatgtctaaattgtccatatagcatcaatatatc |
91 |
Q |
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| T |
13179905 |
caaaagtcacaaattataacagacttggacataataaaattgtttgtgatgtctaaattgtcc--atagcatcaatatatc |
13179827 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 49092241 - 49092366
Alignment:
| Q |
21 |
aaattataacagactcggacttaataaaattgtttgtgatgtctaaattgtccatatagcatcaatatatcatcaaatgaaaatcaaacatgattgggat |
120 |
Q |
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| T |
49092241 |
aaattataattgactccaacataataaaattgcttctgatgtctaaattgtcc--atagcatcaacat---atcaaatgaaaatcatacatgattgagat |
49092335 |
T |
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| Q |
121 |
tgttggaaaataaataactaa-aaataagtgag |
152 |
Q |
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| T |
49092336 |
--ttgaaaaataaataactaacaaataagtgag |
49092366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 44904405 - 44904497
Alignment:
| Q |
42 |
taataaaattgtttgtgatgtctaaattgtccatatagcatcaatatatcatcaaatgaaaatcaaacatgattgggattgttggaaaataaataactaa |
141 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||| || ||||||||||||||| ||||||||| ||| ||| ||||||||||||||| |
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| T |
44904405 |
taataaaattgtttctgatgtctaaattgtcc--atagcatcaacat---atcaaatgaaaatcatacatgattgagat--ttgaaaaataaataactaa |
44904497 |
T |
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