View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2172_low_1 (Length: 646)
Name: NF2172_low_1
Description: NF2172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2172_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 65 - 630
Target Start/End: Original strand, 43867941 - 43868506
Alignment:
| Q |
65 |
tattagaaagtagacacaaaggggtccccctccaacccgcatctgcaaagataacaacaacagcacaagcatggcacagtggattcacaaggaaagcaag |
164 |
Q |
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| T |
43867941 |
tattagcaagtagacacgaaagggttcgccttcaaaccgcgtctgctaaggtaacaacaacagcacaagcatggcacagtggattcacaaggaaagcaag |
43868040 |
T |
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| Q |
165 |
aactccccgccacaacaaaaattcgtcgattcaacaacaacaacaacgtctcaaggaaaaagttctcttcaatactagttttcttccacttgttcctgaa |
264 |
Q |
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| T |
43868041 |
aactccccgccacaacaaaaattcgtcgattcaacaacaacagcaacgtctcaaggaaaaagttctcttcaatactagttttcttccacttgttcctgaa |
43868140 |
T |
|
| Q |
265 |
ctcggaggtgaagaagaacaaggacaagaactacttgttgatattgacgaggctgatgaggagcagttgctgtgtcgtgtgccagttttcgatgccaacc |
364 |
Q |
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| T |
43868141 |
ctcggaggtgaagaagaacaaggacaagaactacttgttgatattgatgaggctgatgaggagcagttgctgtgtcgtgtgccagttttcgatgccaacc |
43868240 |
T |
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| Q |
365 |
cttttgatttagagacttgtactgtgaaaaatgatgctgttgattttgaggaaatgtgtgacttggatagtttctgtgagtttgatgttgatcttgctga |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43868241 |
cttttgatttagagacttgtactgtgaaaaatgatgctgttgattttgaggaaatgtgtgacttggatagtttctgtgagtttgatgttgatcttgctga |
43868340 |
T |
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| Q |
465 |
atttgcagctaatgttgaaagtttacttggtgttgggagtagtgagattcaagagaattcatcaggacaagtgtttgattataaacaagagaatgaaatg |
564 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43868341 |
atttgcagctaatgttgaaagtttacttggtgttgggagtagtgagattcaagagaattcatcaggacaagtgtttgattataaacaagagaatgaaatg |
43868440 |
T |
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| Q |
565 |
gatgcatccaaaaatgaaatgttaaaggttaaggatgaagaacttgatgatttggaatcagttttt |
630 |
Q |
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| T |
43868441 |
gatgcatccaaaagtgaaatgttaaaggttaaggatgaagaacttgatgatttggaatcagttttt |
43868506 |
T |
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