View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2172_low_2 (Length: 467)
Name: NF2172_low_2
Description: NF2172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2172_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 33169092 - 33169527
Alignment:
| Q |
1 |
cgattcaaaccaggtacaatggtataggtcacaacgtggttgactcaaatgtaatattgatgcctctttttcgcataagcttaatagaacaagtataggt |
100 |
Q |
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| T |
33169092 |
cgattcaaaccaggtacaatggtataggtcacaacttggttgactcaaatgtaatattgatgcctctttttcgcataagctaaatagaacaagtataggt |
33169191 |
T |
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| Q |
101 |
atgtacttgcgagatgaggatgatgcttttgtttaggccaaaacaatgtgtgttactccgttgtgtattgtgaatgtgggggaagcgttgggtttgttca |
200 |
Q |
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| T |
33169192 |
atgtacttgcgagatgaggatgatgcttttgtttaggccaaaacaatgtgtgttactccgttgtgtattgtgaatgtggtggaagcg------------- |
33169278 |
T |
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| Q |
201 |
tgcgcttcaatggaccagtgatatgcatgcaatttgataatattgatttcgtgcttgattgcaaaaccccaacaaatgcctt-actgaatcagattgatg |
299 |
Q |
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| T |
33169279 |
----cttcaatggactagtgatatgca----atttgataatgttgatttcatgcttgattgcaaaaccccaacaaatgccttcactgaatcagattgatg |
33169370 |
T |
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| Q |
300 |
ttatagaacttggttatgttatcacaatttgtaggaagttctttgccgctcagtttacaaactttaaggttgatttaaaagaagacaaataaatgaggcc |
399 |
Q |
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| T |
33169371 |
ttatagaacttggttatgttatcacaatttgtaggaagttctttgccgctcagtttacaaactttaaggttgatttaaaagaagacaaacaaatgaggcc |
33169470 |
T |
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| Q |
400 |
actcatattttaacaggggtagccatgttatcaactagtctcaccgcttattttcat |
456 |
Q |
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| T |
33169471 |
actcatattttaacaggggtagccatgttatcaactagtctcaccgcttattttcat |
33169527 |
T |
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Back To:
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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 21511281 - 21511433
Alignment:
| Q |
9 |
accaggtacaatggtataggtcacaacgtggttgactcaaatgtaatattgatgcctctttttcgcataagcttaatagaacaagtatag-gtatgtact |
107 |
Q |
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||||||||| ||||| |||| ||| ||||| ||||||||||||||||||||| ||||||||| | |||| || | |||| || ||| ||||| || |
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| T |
21511281 |
accaggtacgttggtagaggttgcaatgtggtcaactcaaatgtaatattgatgcttctttttcgaaccagctgaacaaaacatgtctagtttatgtgct |
21511380 |
T |
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| Q |
108 |
tgcgagatgaggatgatgcttttgtttaggccaaaacaatgtgtgttactccg |
160 |
Q |
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| T |
21511381 |
tgcaagataaggagggtgtgtttgtcttggccaaaacaatgtgtgttactccg |
21511433 |
T |
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