View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2172_low_4 (Length: 330)
Name: NF2172_low_4
Description: NF2172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2172_low_4 |
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| [»] scaffold0114 (1 HSPs) |
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Alignment Details
Target: scaffold0114 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 2 - 313
Target Start/End: Original strand, 5675 - 5986
Alignment:
| Q |
2 |
aaataatgtcccaaaacgtcttgtaaaaatgcccaccaaacccgtctggacccggcgcactatcatcattaagatgaaaaaccgcagactttatttcaga |
101 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
5675 |
aaataatgtcccaaaatgtctagtaaaaatgcccaccaaacccgtcaggacccggcgcactatcaccattaagatcaaaaaccgcagactttatttcaga |
5774 |
T |
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| Q |
102 |
catcacaggtaagcaacataataaatcattctcagcctccgtaaccaatcttggaaccaattgctctaccatattattagccccacaatcattatcaacg |
201 |
Q |
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| T |
5775 |
catcataggtaaacgacataataaatcagtctcagcctccgtaaccaatcttggaaccaattgctctaccatattattagccccacaatcattatcaacg |
5874 |
T |
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| Q |
202 |
ctaaaaatagactgaaaatatgacacaacatggtcctctatctcaattgggtccgagatgacattatccccatcatgaagaatggacatatgtttagaga |
301 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
5875 |
ctaaaaatagactgaaaatatgacacaacatgctcctctatctcaattgggtccgagatgacattatccctatcatgaagaatggacatatgtttagaaa |
5974 |
T |
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| Q |
302 |
ccgcacgtacct |
313 |
Q |
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|||||||||||| |
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| T |
5975 |
ccgcacgtacct |
5986 |
T |
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