View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2172_low_5 (Length: 321)
Name: NF2172_low_5
Description: NF2172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2172_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 90 - 310
Target Start/End: Complemental strand, 46301166 - 46300946
Alignment:
| Q |
90 |
caggcgtttggcgtgaagtgtaaggtaaagacagaagaatgtgtaatgaagagagagaaatagtgaaacggcggtgaaacgacgtttgatgagtgtcact |
189 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46301166 |
caggcgtttggcgtgaagtgtaaggtaaacacagaagaatgtgtaatgaagagagagaaatagtgaaacggcggtgaaacgacgtttgatgagtgtcact |
46301067 |
T |
|
| Q |
190 |
gtgttatactggatgttctcgccgtcatttcccactgttatttatctctcacgcgccttcactcgcattctgtaaatatcgtttttatccctatgcctat |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46301066 |
gtgttatactggatgttctcgccgtcatttcccactgttatttatctctcacgcaccttcactcgcatgctgtaaatatcgtttttatccctatgcctat |
46300967 |
T |
|
| Q |
290 |
gtagctatctttctgattcat |
310 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
46300966 |
gtagctatctttctgattcat |
46300946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 46301248 - 46301204
Alignment:
| Q |
18 |
tgcaaaggttggtgtttgttacaatgtgggggagagagaaatggt |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46301248 |
tgcaaaggttggtgtttgttacaatgtgggggagagagaaatggt |
46301204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 46301281 - 46301247
Alignment:
| Q |
11 |
tagctgttgcaaaggttggtgtttgttacaatgtg |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
46301281 |
tagctgttgcaaaggttggtgtttgttacaatgtg |
46301247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University