View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2172_low_8 (Length: 288)
Name: NF2172_low_8
Description: NF2172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2172_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 20103022 - 20103266
Alignment:
| Q |
16 |
atcactcttgagatacaaaactcataatttagatatgacaaaattcatataatcctcataacaccttataatgatacaaaaagagtcaaatcacactaca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20103022 |
atcactcttgagatacaaaactcataatttagatacgacaaaattcatataatcctcatcacaccttataatgatacaaaaagagtcaaatcacactaca |
20103121 |
T |
|
| Q |
116 |
aacataccagtaccctaaacataataaacacagaacacattattcaagtacaaaccaaactcatgagtttcaatccacaaagcaatacaataaaataaac |
215 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20103122 |
atcataccagtaccctaaacataataaacacagaactccttattcaagtacaaaccaaactcattagtttcaatccacaaagcaatacaataaaataaac |
20103221 |
T |
|
| Q |
216 |
acctctacaacttaacacccttgatacttggcggtggcaccttct |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20103222 |
acctctacaacttaacacccttgatacttggtggtggcaccttct |
20103266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 55 - 260
Target Start/End: Original strand, 20130271 - 20130486
Alignment:
| Q |
55 |
aaaattcatataatcctcataacaccttataatgatacaaaaagagtcaaatcacactacaaacatacca--------gtaccctaaacataataaacac |
146 |
Q |
| |
|
||||||||||| || || || |||||||||||||||||||| ||||||||||||||||||| || |||| |||| | ||||||||||||||| |
|
|
| T |
20130271 |
aaaattcatatcattcttatcacaccttataatgatacaaatagagtcaaatcacactacattcacaccacacggccagtactccaaacataataaacac |
20130370 |
T |
|
| Q |
147 |
agaa--cacattattcaagtacaaaccaaactcatgagtttcaatccacaaagcaatacaataaaataaacacctctacaacttaacacccttgatactt |
244 |
Q |
| |
|
| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
20130371 |
acaagacacattattcaagtacaaaccaaactcataagtttcaatccacacagcaatacaattaaataaacacttctacaacttaacacccttaatactt |
20130470 |
T |
|
| Q |
245 |
ggcggtggcaccttct |
260 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
20130471 |
ggtggtggcaccttct |
20130486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 161 - 259
Target Start/End: Original strand, 20078850 - 20078948
Alignment:
| Q |
161 |
aagtacaaaccaaactcatgagtttcaatccacaaagcaatacaataaaataaacacctctacaacttaacacccttgatacttggcggtggcaccttc |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
20078850 |
aagtacaaaccaaactcatgagtttcaatccacaaagcaatacaataaaataaacacctttacagcttaacacccttgatacttggtggtggcaccttc |
20078948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 19904311 - 19904158
Alignment:
| Q |
62 |
atataatcctcataacaccttataatgatacaaaaagagtcaaatcacactacaaacatacca--------gtaccctaaacataataaacacagaa--c |
151 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| ||||||||||||||||||| || |||| |||| | |||||||||||||||| || | |
|
|
| T |
19904311 |
atataatccttatcacaccttataatgatacaaatagagtcaaatcacactacattcacaccacacggccagtactccaaacataataaacacacaagac |
19904212 |
T |
|
| Q |
152 |
acattattcaagtacaaaccaaactcatgagtttcaatccacaaagcaatacaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
19904211 |
acattattcaagtacaaaccaaactcataagtttcaatccacacagcaatacaa |
19904158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 176
Target Start/End: Original strand, 20078717 - 20078834
Alignment:
| Q |
59 |
ttcatataatcctcataacaccttataatgatacaaaaagagtcaaatcacactacaaacataccagtaccctaaacataataaacacagaacacattat |
158 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| | |||||||| ||| |||| |||| |||||| |||||||||||||||||| ||||||||| |
|
|
| T |
20078717 |
ttcatataatccttatcacaccttataatgatacaaacatagtcaaattacaagacaatcatatcagtactctaaacataataaacacacaacacattac |
20078816 |
T |
|
| Q |
159 |
tcaagtacaaaccaaact |
176 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
20078817 |
tcaagtacaaaacaaact |
20078834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University