View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2173_high_1 (Length: 509)
Name: NF2173_high_1
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2173_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 44575740 - 44576237
Alignment:
| Q |
1 |
gtctgtttgaacaagcctaatgttttctgattctgacaatgtagaaacatgatcatataaagttctatttgaaagctgaagtttgcgttttcgacatgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575740 |
gtctgtttgaacaagcctaatgttttctgattctgacaatgtagaaacatgatcatataaagttctatttgaaagctgaagtttgcgttttcgacatgct |
44575839 |
T |
|
| Q |
101 |
gcaacgatcacctttgccatgtctgtaaaaacgctcccttgaggttttttgtaaatgtaagtgccgcgaccaaatagaaagatgattatcgagaaagcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44575840 |
gcaacgatcacctttgccatgtctgtaaaaacgctcccttgaggttttttgtaaatgtaagtgccgcgaccaaatagaaagatgattattgagaaagcaa |
44575939 |
T |
|
| Q |
201 |
gacaaaccgtcggaattgcaaatcctaaagtccagcttacattagtttgaatatagacaacaccagtgagcactataacaagtgcaatggtgaaagtgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575940 |
gacaaaccgtcggaattgcaaatcctaaagtccagcttacattagtttgaatatagacaacaccagtgagcactataacaagtgcaatggtgaaagtgaa |
44576039 |
T |
|
| Q |
301 |
ataccaccaattaaagaagctctctaattgtccccttccctttgctgtgttggtgtcaaattggtcagcaccaaatgcaatgttgcaaggcctaattcca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44576040 |
ataccaccaattaaagaagctctctaattgtccccttccctttgctgtgttggtgtcaaattggtcagcaccaaatgcaatgttacaaggcctaattcca |
44576139 |
T |
|
| Q |
401 |
ccagctccaatggataatagtccaagacctgtaaatagaactcctagttgccaatcttttggatgtttacaattaggtctatcattatcatcacaggt |
498 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
44576140 |
ccagcaccaatggataatagtccaagacctgtaaatagaactcctagttgccaatcttttggatgttgacaattaggcctatcattatcatcacaggt |
44576237 |
T |
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