View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2173_high_11 (Length: 354)
Name: NF2173_high_11
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2173_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 35755673 - 35755329
Alignment:
| Q |
1 |
ggaggccgtgattctcagtagctcttttctcttgagtcattccttttcaggtccaggatggggggacgaagaagaa---------gttagaaaaccttct |
91 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
35755673 |
ggaggccgtgattctcagtagctcttttctcttgagtcattccttttcaggtccaggatggggggacgaagaagaaaaagaagaagttagaaagccttct |
35755574 |
T |
|
| Q |
92 |
gagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaa |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35755573 |
gagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaa |
35755474 |
T |
|
| Q |
192 |
aagaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaac |
291 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35755473 |
aacaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaaa |
35755374 |
T |
|
| Q |
292 |
tggtgggagtgggaattggggaacatgggatggatatagcagaag |
336 |
Q |
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| T |
35755373 |
tggtgggagtgggaattggggaacatgggatggatatagcagaag |
35755329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 72 - 335
Target Start/End: Complemental strand, 35760739 - 35760479
Alignment:
| Q |
72 |
aagaagttagaaaaccttctgagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcc |
171 |
Q |
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||||||| | ||| |||||||| || |||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| | | |
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| T |
35760739 |
aagaagtaacaaagccttctgaaccgaattatgctgctcagggatgggaatcgaaccaacatgaaaataatgaaacaaactcttgggaacagtatcgtgc |
35760640 |
T |
|
| Q |
172 |
tccaattgatgaacatgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataac |
271 |
Q |
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||| ||| ||||||| |||||||||||||||||| |||| | || ||||||| ||| | |||| ||||| |||||| ||||||| ||||||||||||| |
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| T |
35760639 |
tcctgttgttgaacattcaaaagaatatggttggcgaaatggccaaaatgattatcatggatggaatcagacggagcaatatggtgctgacttgcataac |
35760540 |
T |
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| Q |
272 |
aagtaccaacaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaa |
335 |
Q |
| |
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|||| | |||||||||| ||| ||| ||| ||||||||| ||||||||||||||| ||||| |
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| T |
35760539 |
aagt---atcaaggaagaaatggcgggcatggaaattggggagcatgggatggatataacagaa |
35760479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 80 - 336
Target Start/End: Complemental strand, 35766211 - 35765958
Alignment:
| Q |
80 |
agaaaaccttctgagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattg |
179 |
Q |
| |
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|||||||||||||| |||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||| ||||||| ||| || | ||| |
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| T |
35766211 |
agaaaaccttctgaaccaaattatgcttctcaaggatgggaattgaaccaacatgaaaatgatgaaacaaactcctgggaacgttattgggcttctgttg |
35766112 |
T |
|
| Q |
180 |
atgaacatgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtacca |
279 |
Q |
| |
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|| ||| ||||||||||||||| ||| ||||| | || ||| ||||||| ||| ||||||||||||||| || |||||| |||||||||||||||| || |
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| T |
35766111 |
ataaacgtgcaaaagaatatggatggaaaaatgggcagaataattctcaaaggcggattcagagggagcgctttggtggcaacttgcataacaagtatca |
35766012 |
T |
|
| Q |
280 |
acaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaag |
336 |
Q |
| |
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| ||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35766011 |
a---ggaagaaatggtgggagtgggaattggggaacatgggatggatataacagaag |
35765958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 143 - 335
Target Start/End: Complemental strand, 35785648 - 35785459
Alignment:
| Q |
143 |
gaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcaga |
242 |
Q |
| |
|
|||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| |
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| T |
35785648 |
gaaacaaactcttgggaacagtatcatgctcctgttgatgaacatgcaaaagaatatgggtggaaaaatagtcagaatgattctcagaggtggattcaga |
35785549 |
T |
|
| Q |
243 |
gggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaa |
335 |
Q |
| |
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||||| |||||||||| ||||||||||||| | | |||||||||| |||| ||| | | ||||||| |||||||||||| |||| ||||| |
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| T |
35785548 |
gggagaactatggtggcaacttgcataacaaat---atcaaggaagaaatggttggaatagtaattgggcaacatgggatgggtataacagaa |
35785459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 86 - 335
Target Start/End: Complemental strand, 35799158 - 35798918
Alignment:
| Q |
86 |
ccttctgagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaac |
185 |
Q |
| |
|
|||||||| ||||||||||||| || |||||| |||||||| ||||||||||||||||||||||||| || ||||| |||| | | || |||| | |
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| T |
35799158 |
ccttctgaaccaaattatgctgctctgggatgcgaatcaaaccaacatgaaaataatgaaacaaacttatgtgaacagtatcatgcgcccgttgaacatg |
35799059 |
T |
|
| Q |
186 |
atgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaagg |
285 |
Q |
| |
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|||||||||| |||| ||||||||| |||| |||||||||||| | |||| ||||||||||| |||||||||||||| |||||||||| | ||||| |
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| T |
35799058 |
ctgcaaaagaacatggatggcaaaatggtcagaatgattctcagggatggaatcagagggagcgatatggtggtgactttcataacaagt---atcaagg |
35798962 |
T |
|
| Q |
286 |
aagaactggtgggagtgggaattggggaacatgggatggatatagcagaa |
335 |
Q |
| |
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||||| | ||||| ||||||||||||||||||||||||| ||||| |
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| T |
35798961 |
aagaaat------agtggaaattggggaacatgggatggatataacagaa |
35798918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 7 - 336
Target Start/End: Complemental strand, 35789615 - 35789289
Alignment:
| Q |
7 |
cgtgattctcagtagctcttttctcttgagtcattccttttcaggtccaggatggggggacgaagaaga-----agttagaaaa-ccttctgagccaaat |
100 |
Q |
| |
|
||||||||||||||| ||| | ||||| ||| ||||| || |||||||||||||||||||||||||| ||||| ||| |||| ||| |||||| |
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|
| T |
35789615 |
cgtgattctcagtagttctctcttcttggatcagtccttatcgggtccaggatggggggacgaagaagacgaaaagttaacaaagccttatgaaccaaat |
35789516 |
T |
|
| Q |
101 |
tatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaatatg |
200 |
Q |
| |
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||| || || |||||||||||| || ||||||| |||||| ||| ||||| |||| |||| ||| | |||| ||||| | |||||||||||||| |
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| T |
35789515 |
gatgttgctcggggatgggaatcgaaccaacatggaaataaccaaaaaaacttttggaaacagtatgatgctcccattgaacatgctgcaaaagaatatg |
35789416 |
T |
|
| Q |
201 |
gttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtgggag |
300 |
Q |
| |
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| ||| ||||| |||| ||||||||||| | |||| |||||||||||| |||||||||||||| |||||||||| | |||||||||| | || |
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| T |
35789415 |
gatggaaaaatggtcagaatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagt---atcaaggaagaaat------ag |
35789325 |
T |
|
| Q |
301 |
tgggaattggggaacatgggatggatatagcagaag |
336 |
Q |
| |
|
||| |||||||| |||||||||||||||| |||||| |
|
|
| T |
35789324 |
tggaaattgggggacatgggatggatataacagaag |
35789289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 35785763 - 35785641
Alignment:
| Q |
7 |
cgtgattctcagtagctcttttctcttgagtcattccttttcaggtccaggatggggggacgaagaagaa---gttagaaaaccttctgagccaaattat |
103 |
Q |
| |
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|||||||||| |||| ||| | ||||||| ||| ||||| || ||||| |||||||||||| |||||||| || | ||| || ||||| ||||| ||| |
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| T |
35785763 |
cgtgattctcggtagttctctcctcttgaatcagtccttgtctggtcctggatggggggacaaagaagaaaacgtaacaaagccctctgaaccaaactat |
35785664 |
T |
|
| Q |
104 |
gctggtcagggatgggaatcaaa |
126 |
Q |
| |
|
|||| ||||||||||||| |||| |
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|
| T |
35785663 |
gctgctcagggatgggaaacaaa |
35785641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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