View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2173_high_15 (Length: 320)
Name: NF2173_high_15
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2173_high_15 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0302 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 1236540 - 1236860
Alignment:
| Q |
1 |
atattcaattgtcatccatctgtgatccttcatttattaacaagtcagctatttgattggcttccttttttatatgaacaaagccgacatccatcaaact |
100 |
Q |
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| T |
1236540 |
atattcaattgtcatccatctgtgatccttcatttattaacaagtcggctatttgattggcttccttttttatatgaacaaagcccacatccatcaaact |
1236639 |
T |
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| Q |
101 |
ctacatgttttttcattttgttgctcaagaatctcagattaaatggacacccatcactacgccccacccaatgttaagcattttaatgtccaattctgta |
200 |
Q |
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| T |
1236640 |
ctacatgttttttcattttgttgctcaagaatttcagattaaatggacacccatcactacgccccacccaatgttaagcattttaatgtccaattctgta |
1236739 |
T |
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| Q |
201 |
ctaatctaataacctttcaaccaatattttctgctgaaaggacaactagactgcaaaaacaa-tgccttaaactcagattcatttgagccttttaaacca |
299 |
Q |
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| T |
1236740 |
ctaatctaataacctttcaaccaatattttctgctgaaaggacaactagactgcaaaaacaattgccttaaactcagattcatttgagccttttaaacca |
1236839 |
T |
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| Q |
300 |
attgatgttgcaaacatcggc |
320 |
Q |
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| T |
1236840 |
attgatgttgcaaacatcggc |
1236860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 50 - 320
Target Start/End: Complemental strand, 1183149 - 1182895
Alignment:
| Q |
50 |
tatttgattggcttccttttttatatgaacaaagccgacatccatcaaactctacatgttttttcattttgttgctcaagaatctcagattaaatggaca |
149 |
Q |
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| T |
1183149 |
tatttgattagcttccctatttatatgaacaaagcccatatccaccaaactctgcat--tttttcattttgttgctcaagaatcttatattacatggaca |
1183052 |
T |
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| Q |
150 |
cccatcactacgccccacccaatgttaagcattttaatgtccaattctgtactaatctaataacctttcaaccaatattttctgctgaaaggacaactag |
249 |
Q |
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| T |
1183051 |
cccatcactacaccccacccaatgt---------------ccaattctatacttctcctacaacctttcaaccaatattttcttttgaaaggaccgctag |
1182967 |
T |
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| Q |
250 |
actgcaaaaacaat-gccttaaactcagattcatttgagccttttaaaccaattgatgttgcaaacatcggc |
320 |
Q |
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| T |
1182966 |
actgcaaaaagaattgccttaaactcagattcgtttgagtcttttaaaccaattgatgttacaaacatcggc |
1182895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 172 - 300
Target Start/End: Complemental strand, 897730 - 897601
Alignment:
| Q |
172 |
tgttaagcattttaatgtccaattctgtactaatctaataacctttcaaccaatattttctgctgaaaggacaactagactgcaaaaacaa-tgccttaa |
270 |
Q |
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||||||||||||| |||||||||||| |||| |||| | ||||||||||||||||||||||| |||||||| ||||| ||||||||||||| || ||||| |
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| T |
897730 |
tgttaagcattttcatgtccaattctatacttatcttacaacctttcaaccaatattttctgttgaaaggaaaactaaactgcaaaaacaattgtcttaa |
897631 |
T |
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| Q |
271 |
actcagattcatttgagccttttaaaccaa |
300 |
Q |
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| T |
897630 |
actcagatttatttgagtcttttaaaccaa |
897601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 1193956 - 1193828
Alignment:
| Q |
193 |
attctgtactaatctaataacctttcaaccaatattttctgctgaaaggacaactagactgcaaaaacaat-gccttaaactcagattcatttgagcctt |
291 |
Q |
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||||| |||| |||| | ||||||||||||||||||||||| |||| |||||| || |||||||||||||| |||||||| | |||||||||| || ||| |
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| T |
1193956 |
attctatacttatcttacaacctttcaaccaatattttctgttgaatggacaattaaactgcaaaaacaatagccttaaattaagattcattttagtctt |
1193857 |
T |
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| Q |
292 |
ttaaaccaattgatgttgcaaacatcggc |
320 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
1193856 |
ttaacccaattgatgttgcaaacatcggc |
1193828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 33 - 171
Target Start/End: Complemental strand, 20329 - 20191
Alignment:
| Q |
33 |
tttattaacaagtcagctatttgattggcttccttttttatatgaacaaagccgacatccatcaaactctacatgttttttcattttgttgctcaagaat |
132 |
Q |
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|||| |||| |||| | ||||||||| |||||||| |||| || ||||||| | |||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
20329 |
tttactaacgagtcggttatttgattagcttccttgtttaaattaacaaagaccacatccatcaaactctgcatgtttttacattttgttgctcaagaat |
20230 |
T |
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| Q |
133 |
ctcagattaaatggacacccatcactacgccccacccaa |
171 |
Q |
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| T |
20229 |
ctcagattaaatgaacacccatcactacaccccacccaa |
20191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 211 - 317
Target Start/End: Complemental strand, 20184 - 20078
Alignment:
| Q |
211 |
aacctttcaaccaatattttctgctgaaaggacaactagactgcaaaaacaat-gccttaaactcagattcatttgagccttttaaaccaattgatgttg |
309 |
Q |
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||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20184 |
aacctttcaaccaatatttattt-tgaaaggaaaactagactgcaaaaacaattgccttaaactcagattcatttgagtcttttaaaccaattgatgtca |
20086 |
T |
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| Q |
310 |
caaacatc |
317 |
Q |
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| T |
20085 |
caaacatc |
20078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 20256862 - 20256908
Alignment:
| Q |
271 |
actcagattcatttgagccttttaaaccaattgatgttgcaaacatc |
317 |
Q |
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| T |
20256862 |
actcagattcatttgagtcttttaagccaattgatgtcccaaacatc |
20256908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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