View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2173_high_18 (Length: 271)
Name: NF2173_high_18
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2173_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 51985608 - 51985363
Alignment:
| Q |
17 |
ccaacctcccataataatttgtgctttttctaaccttaatagggagctgtagataatcaagtgacctccaaagcatgcgacctataaaaggggggaaacg |
116 |
Q |
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| T |
51985608 |
ccaaccttccataataatttgtgctttttctaaccttaatagggagctgtagataatcaagtgacctccaaagcatgcgacctataaaaggggggaaacg |
51985509 |
T |
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| Q |
117 |
aaaattcttagatgtaatcaaatgaccttcaaatcatttgagacatatataagggtaaaaggtaaatttggagataaatcaactattgtgtggatcgcct |
216 |
Q |
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| T |
51985508 |
aaaattcttagatgtaatcaaatgaccttcaaatcatttgagacatatataagggtaaaaggtaaatttggagataaatcaactattgtgtggatcgcct |
51985409 |
T |
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| Q |
217 |
gataaacaataatcaaaagataatcgaacacgaatctaagaataat |
262 |
Q |
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| T |
51985408 |
cataaacaataatcaaaagataatccaacacgaatctaagaataat |
51985363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 51985312 - 51985266
Alignment:
| Q |
215 |
ctgataaacaataatcaaaagataatcgaacacgaatctaagaataa |
261 |
Q |
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|||||||| |||||||||||||||||| ||| |||||||||||||| |
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| T |
51985312 |
ctgataaataataatcaaaagataatcagacatgaatctaagaataa |
51985266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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