View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2173_high_19 (Length: 254)
Name: NF2173_high_19
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2173_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 31060287 - 31060528
Alignment:
| Q |
1 |
ttgggaattttctctaatttcaatagtgcactcctctggtcttgttttgtcctctcagataagtaacaaccaaggactttccccaataagcataaaaata |
100 |
Q |
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| T |
31060287 |
ttgggaattttctctaatttcaatagtgcactcctctggtcttgttttgtcctctcagataagtaacaaccaaggactttccccaataagcataaaaata |
31060386 |
T |
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| Q |
101 |
tttagagagttcactaaaatcgtctataagacttggttgaccaaagcatgccatctgaaaagttcaagtgactggttttcgtccatttctaccattgtga |
200 |
Q |
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| T |
31060387 |
tttagagagttcactaaaatcgtctataagacttggttgaccaaagcatgccaactgaaaagttcaagtgactggttttcgaccatttctaccattgtga |
31060486 |
T |
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| Q |
201 |
agacatggtcagcactaagtgatttgagaagtcgttcatctc |
242 |
Q |
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| T |
31060487 |
agacatggtcagcactaagtgatttgagaaggtgttcatctc |
31060528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 242
Target Start/End: Original strand, 3400217 - 3400316
Alignment:
| Q |
143 |
aaagcatgccatctgaaaagttcaagtgactggttttcgtccatttctaccattgtgaagacatggtcagcactaagtgatttgagaagtcgttcatctc |
242 |
Q |
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| T |
3400217 |
aaagcatgccaacagaaaagttcaagggactggtcttcgtccatttctgtcattgtgaagatatggtcaccactaagtgatttgagaaggcgtccatctc |
3400316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 242
Target Start/End: Complemental strand, 31174331 - 31174232
Alignment:
| Q |
143 |
aaagcatgccatctgaaaagttcaagtgactggttttcgtccatttctaccattgtgaagacatggtcagcactaagtgatttgagaagtcgttcatctc |
242 |
Q |
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| T |
31174331 |
aaagcatgccaacagaaaagttcaagggactggtatttgtccatttccgtcattgtgaagatatggtcgtcactaagtgagttgagaaggcgtgcatctc |
31174232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 3326418 - 3326496
Alignment:
| Q |
1 |
ttgggaattttctctaatttcaatagtgcactcctctggtcttgttttgtcctctcagataagtaacaaccaaggactt |
79 |
Q |
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| T |
3326418 |
ttgggaattctctctaatttcaagagtacacttatccattcttgttttgtcctctcatataagtatgaaccaaggactt |
3326496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 20810749 - 20810671
Alignment:
| Q |
1 |
ttgggaattttctctaatttcaatagtgcactcctctggtcttgttttgtcctctcagataagtaacaaccaaggactt |
79 |
Q |
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| T |
20810749 |
ttgggaattttctctaattttgatagtgcacatctccattcttgttccgtcctctcagataagtaacgtccaaggactt |
20810671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 8373327 - 8373388
Alignment:
| Q |
143 |
aaagcatgccatctgaaaagttcaagtgactggttttcgtccatttctaccattgtgaagac |
204 |
Q |
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| T |
8373327 |
aaagcatgccagctgaaaagttcaagggactcgtttttatccatttcaatcattgtgaagac |
8373388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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