View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2173_high_27 (Length: 219)
Name: NF2173_high_27
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2173_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 4276310 - 4276199
Alignment:
| Q |
93 |
tatatcttaaagttaggatttgtaagcttttgcatctaaacatgttttttacattgaaatctagtgatcaattaacttttatgtaaatataaccggacat |
192 |
Q |
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| T |
4276310 |
tatatcttaaagttaggatttgtaagcttttgcatctaaacatgttttttacattgaaatctagtgatcaattaacttttatgtaaatataaccggacat |
4276211 |
T |
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| Q |
193 |
aaaactctttca |
204 |
Q |
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| T |
4276210 |
aaaactctttca |
4276199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 4276416 - 4276341
Alignment:
| Q |
16 |
caccatcttgattttagcagccataattgatcgtgaatgtgtaaaatttattttaacatgttttctttctcttgga |
91 |
Q |
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| T |
4276416 |
caccatcttgaatttagcagccataattgatcgtgaatgtgtaaaatttattttaacatgttttctttctcttgga |
4276341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 4273388 - 4273323
Alignment:
| Q |
137 |
ttttttacattgaaatctagtgatcaattaacttttatgtaaatataaccggacataaaactcttt |
202 |
Q |
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| T |
4273388 |
ttttttacaatgaaatctattgttcaattaacttttatgtaagtgtaacctaacataaaacacttt |
4273323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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