View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2173_low_12 (Length: 366)

Name: NF2173_low_12
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2173_low_12
NF2173_low_12
[»] chr6 (10 HSPs)
chr6 (18-357)||(2973729-2974068)
chr6 (18-249)||(2951658-2951889)
chr6 (18-249)||(2926876-2927107)
chr6 (18-249)||(2934315-2934546)
chr6 (18-268)||(2997509-2997759)
chr6 (18-274)||(2964204-2964472)
chr6 (22-274)||(2659106-2659361)
chr6 (21-249)||(3003906-3004140)
chr6 (18-356)||(2982588-2982923)
chr6 (272-356)||(2964485-2964569)
[»] scaffold0024 (1 HSPs)
scaffold0024 (18-342)||(35274-35589)
[»] chr7 (2 HSPs)
chr7 (18-125)||(3338897-3339004)
chr7 (148-224)||(3339015-3339091)
[»] chr3 (4 HSPs)
chr3 (20-141)||(49618113-49618234)
chr3 (148-249)||(49618259-49618361)
chr3 (148-273)||(49613279-49613404)
chr3 (272-340)||(49613418-49613486)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 2973729 - 2974068
Alignment:
Q  18 ctatcttatctgatttcaaaggctgttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattga 117  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2973729 ctatcttatctgatttcaaaggctgttattccaaaaccctatcattttctcatattgaacttgttaagttaattttaatggattccggttttataattga 2973828  T
Q  118 acattttttgagatcctgttgtgaaggtgatctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctat 217  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| |||||||||||||||||||||| |    
T  2973829 acatttattgagatcctgttgtgaaggtgatctcttaaaaccttggttatataatgatatatcatcagatttattgttacttgaaaatcagcttcccttt 2973928  T
Q  218 tttgttattgaaaaaatttacagtctttcattcagttctacaaatgctagtgttcc-ttcttttcttgaactcacttttgattattttcaaggtttcaat 316  Q
    || ||||||||||||||||||||| ||||||| | |  | | ||  ||| || ||| |||||||||| |||||||| ||| ||| |||||| ||||||||    
T  2973929 ttcgttattgaaaaaatttacagtatttcattgactgttcctaacacta-tgatccattcttttcttaaactcactattgcttactttcaatgtttcaat 2974027  T
Q  317 aaatcaaaattgagttttgataataaagatattagtataat 357  Q
    ||| |||||||| |||||||||| || ||||||||||||||    
T  2974028 aaaccaaaattgggttttgataacaatgatattagtataat 2974068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 2951658 - 2951889
Alignment:
Q  18 ctatcttatctgatttcaaaggctgttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattga 117  Q
    |||||||||||||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||| |    
T  2951658 ctatcttatctgatttcaaaagttgttattctgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataattca 2951757  T
Q  118 acattttttgagatcctgttgtgaaggtgatctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctat 217  Q
    || ||||| || |||||||| |||||| || ||||| |||||||||||||  | || ||||| |   |||||||  |||||||||||||||||||||| |    
T  2951758 acttttttggacatcctgttatgaaggggagctctttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttcccttt 2951857  T
Q  218 tttgttattgaaaaaatttacagtctttcatt 249  Q
    || |||||||||||||||||||||||||||||    
T  2951858 ttcgttattgaaaaaatttacagtctttcatt 2951889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 2926876 - 2927107
Alignment:
Q  18 ctatcttatctgatttcaaaggctgttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattga 117  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||  |||||| |||||||||| |    
T  2926876 ctatcttatctgatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcaattccgcttttataattca 2926975  T
Q  118 acattttttgagatcctgttgtgaaggtgatctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctat 217  Q
    || ||||| || ||||| ||  |||||   |||||| |||||||||||||| |||| ||||| |   |||||||  |||||||||||||||||||||| |    
T  2926976 acttttttggacatcctattacgaagggtgtctctttaaaccttggttagataatggtataagacacgatttatggttacttgaaaatcagcttcccttt 2927075  T
Q  218 tttgttattgaaaaaatttacagtctttcatt 249  Q
    || |||||||||||||||||||||||||||||    
T  2927076 ttcgttattgaaaaaatttacagtctttcatt 2927107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 2934315 - 2934546
Alignment:
Q  18 ctatcttatctgatttcaaaggctgttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattga 117  Q
    |||||||||||||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| |    
T  2934315 ctatcttatctgatttcaaacgttgttattctgaaaccctaccattttctcatgatgaacttgttaagttaattttaatagattccgcttttataattca 2934414  T
Q  118 acattttttgagatcctgttgtgaaggtgatctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctat 217  Q
    || ||||| ||||  || || ||||||   |||||| ||||||| |||||| | || |||||||   |||||| | |||||||||||||||||||||| |    
T  2934415 acttttttggagagactattatgaagggcgtctctttaaacctttgttagatactggtataacagacgatttaatgttacttgaaaatcagcttcccttt 2934514  T
Q  218 tttgttattgaaaaaatttacagtctttcatt 249  Q
    || |||||||||||||||||||||||||||||    
T  2934515 ttcgttattgaaaaaatttacagtctttcatt 2934546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 2997759 - 2997509
Alignment:
Q  18 ctatcttatctgatttcaaaggctgttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattga 117  Q
    ||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  2997759 ctatcttatctaatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccggttttataattga 2997660  T
Q  118 acattttttgagatcctgttgtgaaggtgatctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctat 217  Q
    || ||| ||||||| |   | ||  ||   | ||||  ||| |||||| ||  ||| ||||||| || ||||| | |||||||||||||| ||||||| |    
T  2997659 acttttcttgagataccactatggtgggtttgtctttgaactttggttcgatgatggtataacaacaaatttaatgttacttgaaaatcaacttcccttt 2997560  T
Q  218 tttgttattgaaaaaatttacagtctttcattcagttctacaaatgctagt 268  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2997559 ttcgttattgaaaaaatttacagtctttcattcagttctacaaatgctagt 2997509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 2964204 - 2964472
Alignment:
Q  18 ctatcttatctgatttcaaaggctgttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattga 117  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||| ||||||||||||||    
T  2964204 ctatcttatctgatttcaaatgctgttattccgaaactctaccattttctcatgatgaacttgtcaagttaatcttaatcgattctggttttataattga 2964303  T
Q  118 acattttttgagatcctgttgtgaag----gtga--------tctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaat 205  Q
    || |||||  ||||||| || ||| |    |||         |||||  | |||||||||| |   || ||||| |||||||||| | ||||||||||||    
T  2964304 acttttttgcagatcctattatgatgttcggtgcattaatattctctctataccttggttatatgttggtataagatcagatttaatgttacttgaaaat 2964403  T
Q  206 cagcttccctattttgttattgaaaaaatttacagtctttcattcagttctacaaatgctagtgttcct 274  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2964404 cagcttccctatttcgttattgaaaaaatttacagtctttcattgagttctacaaatgctagtgttcct 2964472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 22 - 274
Target Start/End: Complemental strand, 2659361 - 2659106
Alignment:
Q  22 cttatctgatttcaaaggctgttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattgaacat 121  Q
    |||||||  ||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| ||||||||||| ||| |    
T  2659361 cttatctcgtttcaaaagttgttattccgaaaccctaccattttctgataatgaacttgttaagttaatcttaatcgattcctgttttataattcaactt 2659262  T
Q  122 tttttgagatcctgttgtgaaggtga---tctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctatt 218  Q
    |||| || || || || ||| | ||    ||| || ||||||||||||||  ||| |||| ||| ||||||||| |||||||||||||||||||||| ||    
T  2659261 ttttggacatactattatgatgatgggtttctatttaaaccttggttagatgatggtatagcattagatttattgttacttgaaaatcagcttccctttt 2659162  T
Q  219 ttgttattgaaaaaatttacagtctttcattcagttctacaaatgctagtgttcct 274  Q
    | ||||||||| |||||||||  |||||||  ||||||||||||||||||||||||    
T  2659161 tcgttattgaagaaatttacaaactttcatcgagttctacaaatgctagtgttcct 2659106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 3004140 - 3003906
Alignment:
Q  21 tcttatctgatttcaaaggctgttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattgaaca 120  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||| |||     
T  3004140 tcttatctgatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataattcaact 3004041  T
Q  121 ttttttgagatcctgttgtga----aggtg--atctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccc 214  Q
    ||||| ||||| || || |||     ||||   |||||| |||||||||||||| |||| ||||| |   |||||||  |||||||||||||||||||||    
T  3004040 tttttggagatactattatgatcgtcggtgcattctctttaaaccttggttagataatggtataagaaacgatttatggttacttgaaaatcagcttccc 3003941  T
Q  215 tattttgttattgaaaaaatttacagtctttcatt 249  Q
    | ||| |||||||||||||||||||||||||||||    
T  3003940 tttttcgttattgaaaaaatttacagtctttcatt 3003906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 2982588 - 2982923
Alignment:
Q  18 ctatcttatctgatttcaaaggctgttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattga 117  Q
    ||||||||||||||||||||  ||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |    
T  2982588 ctatcttatctgatttcaaacactgttattctgaacccctaccattttctcataatgaacttgttaagttaatcttaatcgattccgcttttataattca 2982687  T
Q  118 acattttttgagatcctgttgtgaaggtgatctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctat 217  Q
    || ||||| ||||   | || ||  || | ||||||  ||||||||||| ||| |  ||||  ||  ||| || | |||||||||||||||||||||| |    
T  2982688 acttttttggagaaaatattatggtggggctctctttcaaccttggttaaaaagtcttatattatatgatgtactgttacttgaaaatcagcttcccttt 2982787  T
Q  218 tttgttattgaaaaaatttacagtctttcattcagttctacaaatgctagtgttccttcttttcttgaactcacttttgattattttcaaggtttcaata 317  Q
    || |||||||||||||||||||||| |||||   |||| | | |    ||||||||||||||||||||||||||| |  |||| ||| ||   || ||||    
T  2982788 ttcgttattgaaaaaatttacagtcgttcat---gttccatatacaaaagtgttccttcttttcttgaactcactatccattactttaaaaaattgaata 2982884  T
Q  318 aatcaaaattgagttttgataataaagatattagtataa 356  Q
    |||||||||||  ||||||||||   |||||||||||||    
T  2982885 aatcaaaattgtcttttgataatggtgatattagtataa 2982923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 2964485 - 2964569
Alignment:
Q  272 ccttcttttcttgaactcacttttgattattttcaaggtttcaataaatcaaaattgagttttgataataaagatattagtataa 356  Q
    |||||||||||| ||||||||  |||||||||| |   || ||||||||||||||||  |||||||||    |||||||||||||    
T  2964485 ccttcttttcttaaactcactactgattattttgattattacaataaatcaaaattggattttgataagggtgatattagtataa 2964569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 35589 - 35274
Alignment:
Q  18 ctatcttatctgatttcaaaggctgttattccgaaaccctaccattttctcataatgaa---cttgttaagttaattttaatggattccggttttataat 114  Q
    |||||||||||||||||||| | |||||||| ||||||||| ||||| ||||  |||||   |||||||||||||| ||||| |||||||||||||||||    
T  35589 ctatcttatctgatttcaaatgttgttattcggaaaccctatcatttcctcaggatgaagaacttgttaagttaatcttaatcgattccggttttataat 35490  T
Q  115 tgaacattttttgagatcctgttgtgaaggtgatctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccc 214  Q
    | ||| ||||| || ||  | ||  ||| |  || || || |||||||||||||   || ||||| |||||||||||| |||||||||||||||||||||    
T  35489 tcaacttttttggaaatatt-ttaagaaag--atttcctagaaccttggttagatgctggtataagatcagatttattgttacttgaaaatcagcttccc 35393  T
Q  215 tattttgttattgaaaaaatttacagtctttcattcagttctacaaatgctagtgttccttcttttcttgaactcacttttgattattttcaaggtttca 314  Q
    | ||| |||||||||||||||||| ||||||| |  |||||||||||||          ||||||||||||||||||| || |||||||||||  |||||    
T  35392 tttttcgttattgaaaaaatttacggtctttcgtggagttctacaaatg---------gttcttttcttgaactcactattaattattttcaatatttca 35302  T
Q  315 ataaatcaaaattgagttttgataataa 342  Q
    || |||||||||||  ||||||||||||    
T  35301 atcaatcaaaattggtttttgataataa 35274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 3338897 - 3339004
Alignment:
Q  18 ctatcttatctgatttcaaaggctgttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattga 117  Q
    |||||||| ||||||||||| | |||||||| |||  |||| |||||||| || || |||||||||||||||| ||||| |||||||||||||||||| |    
T  3338897 ctatcttacctgatttcaaacgttgttattcggaattcctaacattttctgatgataaacttgttaagttaatcttaatcgattccggttttataattca 3338996  T
Q  118 acattttt 125  Q
    || |||||    
T  3338997 actttttt 3339004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 3339015 - 3339091
Alignment:
Q  148 tctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctattttgtta 224  Q
    |||||| ||||||||||| | |  || |||| ||||||||||||| |||||||||||||||||||||| ||| ||||    
T  3339015 tctctttaaaccttggttggtaggtggtatatcatcagatttattgttacttgaaaatcagcttccctttttcgtta 3339091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 49618113 - 49618234
Alignment:
Q  20 atcttatctgatttcaaaggctgttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattgaac 119  Q
    ||||||||| |||||||   || ||||||| ||||||||| |||| ||||| ||||| ||||||||||||| ||||| |||||||| || |||||||| |    
T  49618113 atcttatctcatttcaatcactcttattccaaaaccctacaatttactcatgatgaatttgttaagttaatcttaattgattccgggttcataattgagc 49618212  T
Q  120 attttttgagatcctgttgtga 141  Q
     ||| | |||||||| ||||||    
T  49618213 ttttctggagatcctattgtga 49618234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 49618259 - 49618361
Alignment:
Q  148 tctcttaaaaccttggttagaaaatgatataacatcagatttattctt-acttgaaaatcagcttccctattttgttattgaaaaaatttacagtctttc 246  Q
    |||||||||||||| |||||| | |  | ||| || ||||||||| || |||| ||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  49618259 tctcttaaaacctttgttagatagtcttgtaagattagatttattgtttacttcaaaatcagcttccctatttcgttattgaaaatatttacattctttc 49618358  T
Q  247 att 249  Q
    |||    
T  49618359 att 49618361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 273
Target Start/End: Original strand, 49613279 - 49613404
Alignment:
Q  148 tctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctattttgttattgaaaaaatttacagtctttca 247  Q
    ||||||||||||||||||||    | | |||| || |||||| || ||||||||||||||  | || | |||||||||| || ||||||||| |||||||    
T  49613279 tctcttaaaaccttggttagcttctaacataagattagatttgttgttacttgaaaatcaattgccattttttgttattcaagaaatttacaatctttca 49613378  T
Q  248 ttcagttctacaaatgctagtgttcc 273  Q
    || | |||||| || |||||||||||    
T  49613379 tttacttctactaacgctagtgttcc 49613404  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 49613418 - 49613486
Alignment:
Q  272 ccttcttttcttgaactcacttttgattattttcaaggtttcaataaatcaaaattgagttttgataat 340  Q
    ||||||||||||||||| | |||||||||||||  |  || |||| ||||||| ||| |||||||||||    
T  49613418 ccttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataat 49613486  T

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