View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2173_low_13 (Length: 356)
Name: NF2173_low_13
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2173_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 109 - 346
Target Start/End: Complemental strand, 454061 - 453824
Alignment:
| Q |
109 |
aaaacgattaataacctaaaaatatgataagtgacaaaaattagtgttagtgactaggccccacttattcatagcatttaatttgatgatgctcttcatg |
208 |
Q |
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| T |
454061 |
aaaacgattaataacctaaaaatatgataagtgacaaaaattattgttagtgactaggccccacttattcatagcatttaatttgatgatgctcttcatg |
453962 |
T |
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| Q |
209 |
cactataaataagagtgttgtaagaacattttctttcatccttttctcaagtattgttttgttcagtttactaattaaaaaagatgaagttcaaaccttt |
308 |
Q |
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| T |
453961 |
cactataaataagagtgttgtaagaacattttctttcatccttttctcaagtattgttgtgttcagtttactaattaaaaaagatgaagttcaaaccttt |
453862 |
T |
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| Q |
309 |
tattttgctgatacttctgtctggtgtggttctctctg |
346 |
Q |
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| T |
453861 |
tattttgctgatacttctgtctggtgtggttctctctg |
453824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 43 - 342
Target Start/End: Complemental strand, 441781 - 441483
Alignment:
| Q |
43 |
agttcacacttggtagtggcacgtaatatggaag--gaaattgacttaaaattaatatggttgaaat------gaaaacgattaataacctaaaaatatg |
134 |
Q |
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| T |
441781 |
agttcacacttggtagtggcagataatctggaatatgaaactgacttaaaattaatatggttgaaattgaaatgaaaacaattaataacgtgaaaatatg |
441682 |
T |
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| Q |
135 |
ataagt-gacaaaaattagtgttagtgactaggccccacttattcatagcatttaatttgatgatgctcttcatgcactataaataagagtgttgtaaga |
233 |
Q |
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| T |
441681 |
ataaggagacaaaaattagtgttaatgagtaggtccaccttacttatagcatttaatttgatgatgctcttcatgcactataaatatgggtgttgttaga |
441582 |
T |
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| Q |
234 |
acattttctttcatccttttctcaagtattgttttgttcagtttactaattaaaaaagatgaagttcaaaccttttattttgctgatacttctgtctggt |
333 |
Q |
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| T |
441581 |
gcattttctctcatccttttctcaagta----------ctgttaactaattaacaaagatgaatttcaaaccttttgttttgctgatacttctgtctggt |
441492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 454206 - 454104
Alignment:
| Q |
18 |
gtggcttatagagaaaaaatttaaaagttcacacttggtagtggcacgtaatatggaaggaaattgacttaaaattaatatggttgaaatgaaaacgatt |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
454206 |
gtggcttatagagaaaaaatttcaaagttcacacttggtagtggcacgtaatatggaaggaaattgacttaaaattaatatggtggaaatgaaaacgatt |
454107 |
T |
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| Q |
118 |
aat |
120 |
Q |
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||| |
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| T |
454106 |
aat |
454104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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