View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2173_low_17 (Length: 326)
Name: NF2173_low_17
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2173_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 21718764 - 21719060
Alignment:
| Q |
18 |
aaatgcttccttgaactcagctagggacctaaactccatgccaaccttgaacttgaatttcttgttaagctgttccatcctaaacttttcatatcttgga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21718764 |
aaatgcttccttgaactcagctagggacctaaactccatgccaaccttgaacttgaatttcttgttaagctgttccatcctaaacttttcatatctttta |
21718863 |
T |
|
| Q |
118 |
cctttttcctcatcagaatcattagggtcagagctgcccaatgaatcactttcataatcaacatctatttcaacctcatctaataacttctcatcttcat |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21718864 |
cctttttcctcatcagaatcatcagggtcagagctggccaatgaatcactttcataatcaacatctatttcaaccctatctaataacttctcatcttcat |
21718963 |
T |
|
| Q |
218 |
ttctttgatcagagtgagtagtacttggaccttcaatcatgagataattagaatcagctaaaccaaacccatcctccattcctaaacctctctcttc |
314 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21718964 |
ttctttgatcagagtgagtagtacttggaccttcaatcatgagataattagaatcagctaaaccaaacccatcctccattcctaaacctctctcttc |
21719060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 25 - 314
Target Start/End: Complemental strand, 20652991 - 20652702
Alignment:
| Q |
25 |
tccttgaactcagctagggacctaaactccatgccaaccttgaacttgaatttcttgttaagctgttccatcctaaacttttcatatcttggaccttttt |
124 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20652991 |
tccttgaactcatctagggacttaaactccatgccaaccttgaacttgaattttttgttaagctgttccatcctaaacttttcatatcttggaccttttt |
20652892 |
T |
|
| Q |
125 |
cctcatcagaatcattagggtcagagctgcccaatgaatcactttcataatcaacatctatttcaacctcatctaataacttctcatcttcatttctttg |
224 |
Q |
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||||||||||||||| ||||| ||||||||| | |||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
20652891 |
cctcatcagaatcatcagggttagagctgccaagggaatcagtttcataatcaacatctatttcaacaccatctaataacacttcatcttcatttcttgt |
20652792 |
T |
|
| Q |
225 |
atcagagtgagtagtacttggaccttcaatcatgagataattagaatcagctaaaccaaacccatcctccattcctaaacctctctcttc |
314 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||| |||| ||||| |
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| T |
20652791 |
atcagggtgagtagtacttggaccttcaatcatgagattattagaatcagctaaaccaaacccatcctctagtcctaaagctctatcttc |
20652702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 17130786 - 17130940
Alignment:
| Q |
18 |
aaatgcttccttgaactcagctagggacctaaactccatgccaaccttgaacttgaatttcttgttaagctgttccatcctaaacttttcatatcttgga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17130786 |
aaatgcttccttgaactcagctagggacctaaactccatgccaaccttgaacttgaatttcttgttaagctgttccatcctaaacttttcatatcttgga |
17130885 |
T |
|
| Q |
118 |
cctttttcctcatcagaatcattagggtcagagctgcccaatgaatcactttcat |
172 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
17130886 |
cctttttcctcatcagaatcatcagggtcagagctggccaatgaatcactttcat |
17130940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 17130936 - 17131037
Alignment:
| Q |
213 |
ttcatttctttgatcagagtgagtagtacttggaccttcaatcatgagataattagaatcagctaaaccaaacccatcctccattcctaaacctctctct |
312 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17130936 |
ttcatttctttgatcagagcgagtagtacttggaccttcaatcatgagataattagaatcagctaaaccaaacccatcctccattcctaaacctctctct |
17131035 |
T |
|
| Q |
313 |
tc |
314 |
Q |
| |
|
|| |
|
|
| T |
17131036 |
tc |
17131037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 1380603 - 1380708
Alignment:
| Q |
97 |
ctaaacttttcatatcttggacctttttcctcatcagaatcattagggtcagagctgcccaatgaatcactttcataatcaacatctatttcaacctcat |
196 |
Q |
| |
|
|||||| |||||||| | |||||||| ||| ||||||||||| ||||||| ||| ||||| |||||||||||||||| |||| |||| ||| |||| |
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| T |
1380603 |
ctaaacctttcatatttaggacctttctccctatcagaatcatcagggtcactgctacccaactcatcactttcataatcaccatcaatttgaacatcat |
1380702 |
T |
|
| Q |
197 |
ctaata |
202 |
Q |
| |
|
|||||| |
|
|
| T |
1380703 |
ctaata |
1380708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 17322490 - 17322405
Alignment:
| Q |
97 |
ctaaacttttcatatcttggacctttttcctcatcagaatcattagggtcagagctgcccaatgaatcactttcataatcaacatc |
182 |
Q |
| |
|
||||||||||||||| | |||||||| ||| ||||||||||| ||||||| ||| ||||| |||||||||||||||| |||| |
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|
| T |
17322490 |
ctaaacttttcatatttaggacctttctccctatcagaatcatcagggtcactgctacccaactcatcactttcataatcaccatc |
17322405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 14799691 - 14799743
Alignment:
| Q |
107 |
catatcttggacctttttcctcatcagaatcattagggtcagagctgcccaat |
159 |
Q |
| |
|
||||| ||||||||||||| ||||| ||| ||| |||||||||||| |||||| |
|
|
| T |
14799691 |
catattttggacctttttcatcatctgaagcatcagggtcagagcttcccaat |
14799743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 15246683 - 15246735
Alignment:
| Q |
107 |
catatcttggacctttttcctcatcagaatcattagggtcagagctgcccaat |
159 |
Q |
| |
|
||||| ||||||||||||| ||||| ||| ||| |||||||||||| |||||| |
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|
| T |
15246683 |
catattttggacctttttcatcatctgaagcatcagggtcagagcttcccaat |
15246735 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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