View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2173_low_20 (Length: 306)
Name: NF2173_low_20
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2173_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 42991500 - 42991666
Alignment:
| Q |
1 |
ctgtctcttccacttccttctctgattctgcattgcagagcaacgagcctgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgat |
100 |
Q |
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| T |
42991500 |
ctgtctcttccacttccttctctgattctgcattgcagagcaacgagcttgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgat |
42991599 |
T |
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| Q |
101 |
atataattactgcaacgatcttaagcgatttccacaaggtattcctgctgagtgtaggcgttcaagg |
167 |
Q |
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| T |
42991600 |
atataattactgcaacgatcttaagcgatttccacaaggtattcctgctgagtgtaggcgttcaagg |
42991666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 35018237 - 35018349
Alignment:
| Q |
45 |
gagcctgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgatatataattactgcaacgatcttaagcgatttccacaaggtattc |
144 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || || || |||||||||||||| ||||||||| ||| |
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| T |
35018237 |
gagcttgatgcttatggtagaagaagattgagatgggttcaaaagtatttcatgatttataactattgtaatgatcttaagcgattcccacaaggtgttc |
35018336 |
T |
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| Q |
145 |
ctgctgagtgtag |
157 |
Q |
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| T |
35018337 |
ctgttgagtgtag |
35018349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 42993585 - 42993643
Alignment:
| Q |
230 |
atttgtttgccgttgttttaatttattattatgattctttgatttactatcttcctctgtat |
291 |
Q |
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| T |
42993585 |
atttgtttgttgttgttttaatttat---tatgattctttgatttactatcttcctctgtat |
42993643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 38214003 - 38213792
Alignment:
| Q |
1 |
ctgtctcttccacttccttctctgattctgcattgcagagcaacgagcctgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| || || ||||| |
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| T |
38214003 |
ctgtctcttccacttccttctctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgat |
38213904 |
T |
|
| Q |
101 |
atataattactgcaacgatcttaagcgatttccacaaggtattcctgctgagtgtaggcgttcaaggttctga-gag------atgatgaagaacgtata |
193 |
Q |
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| T |
38213903 |
ctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatata |
38213804 |
T |
|
| Q |
194 |
atagccatctta |
205 |
Q |
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|||||||||||| |
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| T |
38213803 |
atagccatctta |
38213792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 38218222 - 38218011
Alignment:
| Q |
1 |
ctgtctcttccacttccttctctgattctgcattgcagagcaacgagcctgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| || || ||||| |
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| T |
38218222 |
ctgtctcttccacttccttctctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgat |
38218123 |
T |
|
| Q |
101 |
atataattactgcaacgatcttaagcgatttccacaaggtattcctgctgagtgtaggcgttcaaggttctga-gag------atgatgaagaacgtata |
193 |
Q |
| |
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||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||| |||| |
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| T |
38218122 |
ctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatata |
38218023 |
T |
|
| Q |
194 |
atagccatctta |
205 |
Q |
| |
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|||||||||||| |
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|
| T |
38218022 |
atagccatctta |
38218011 |
T |
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