View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2173_low_21 (Length: 302)
Name: NF2173_low_21
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2173_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 7546638 - 7546912
Alignment:
| Q |
20 |
gctaggtagtgtaaaatgagtatctctaagcggagggagtgtaatttactataaatgaaatggagacccagaatcattggttaagaaaaaagaaattgaa |
119 |
Q |
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| T |
7546638 |
gctaagtagtgtaaaatgagtatctctaagaggagggagtgtaatttactataaatgaaatggagacccagaatcattggttaagaaaaaagaaattgaa |
7546737 |
T |
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| Q |
120 |
aaataaccatacttaaactatgagtaaaacacatccaatcatgcaagactgatgcattctttcaattgattacgactttgcaaaattaactgagttgaaa |
219 |
Q |
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| T |
7546738 |
aaataaccatacttaaactatgagtaaaacacatccaatcatgcaagactgatgcattctttcaattgattacgactttgcaaaattaaataagttgaaa |
7546837 |
T |
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| Q |
220 |
tatttatagtaattaagtaacttttgttcttgtatggtgtatcactgcaggcttcaaaggttctaaatctgtgct |
294 |
Q |
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| T |
7546838 |
tatttatagtaattaggtaacttttgttcttgtatgatgtatcactgcaggcttcaaaggttctaaatttgtgct |
7546912 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 1128081 - 1128128
Alignment:
| Q |
239 |
acttttgttcttgtatggtgtatcactgcaggcttcaaaggttctaaa |
286 |
Q |
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| T |
1128081 |
acttatgttcttgtatgatgtatcattgcaggcttcaaaggttctaaa |
1128128 |
T |
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