View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2173_low_27 (Length: 249)
Name: NF2173_low_27
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2173_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7540214 - 7539978
Alignment:
| Q |
1 |
tgttaggtggtatctctttcatctttgacggcatcattaacctaacatgtgcattacttaaatccggtctataaatagttttttatgtgggccaacttag |
100 |
Q |
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| T |
7540214 |
tgttaggtggtatctctttcatctttgacggcatcattaacctaacatgtgcattacttaaatccggtctataaatagttttttatgtgggccaacttag |
7540115 |
T |
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| Q |
101 |
aacgaaagcatcaattgttatgatttaatactatgaggaaatcccacccataaaactaacctactagttgggagagtctcgtgactcaagtactatattg |
200 |
Q |
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| T |
7540114 |
aacgaaagcatcaattgttatgatttaatactatgaggaaatcccacccataaaactaacctactagttgggagagtctcgtgactcaagtactatattg |
7540015 |
T |
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| Q |
201 |
aacatttatatataatcaatgtgagactctgaagaat |
237 |
Q |
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| T |
7540014 |
aacatttatatataatcaatgtgagactctgaagaat |
7539978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 7453002 - 7452901
Alignment:
| Q |
15 |
tctttcatctttgacggcatcattaacctaacatgtgcattacttaaatccggtctataaatagttttttatgtgggccaacttagaacgaaagcatcaa |
114 |
Q |
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| T |
7453002 |
tctttaatctttgatggcttcattaacctaagaggttgattactttaatccggcctataaatagtcttttatgtggtccaactttggagaaaagcatcaa |
7452903 |
T |
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| Q |
115 |
tt |
116 |
Q |
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|| |
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| T |
7452902 |
tt |
7452901 |
T |
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