View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2173_low_30 (Length: 241)
Name: NF2173_low_30
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2173_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 31060318 - 31060528
Alignment:
| Q |
19 |
tcctctggtcttgttttgtcctctcagataagtaacaaccaaggactttccccaataagcataaaaatatttagagagttcactaaaatcgtctataaga |
118 |
Q |
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| T |
31060318 |
tcctctggtcttgttttgtcctctcagataagtaacaaccaaggactttccccaataagcataaaaatatttagagagttcactaaaatcgtctataaga |
31060417 |
T |
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| Q |
119 |
cttggttgaccaaagcatgccatctgaaaagttcaagtgactggttttcgtccatttctaccattgtgaagacatggtcagcactaagtgatttgagaag |
218 |
Q |
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| T |
31060418 |
cttggttgaccaaagcatgccaactgaaaagttcaagtgactggttttcgaccatttctaccattgtgaagacatggtcagcactaagtgatttgagaag |
31060517 |
T |
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| Q |
219 |
tcgttcatctc |
229 |
Q |
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||||||||| |
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| T |
31060518 |
gtgttcatctc |
31060528 |
T |
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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 3400217 - 3400316
Alignment:
| Q |
130 |
aaagcatgccatctgaaaagttcaagtgactggttttcgtccatttctaccattgtgaagacatggtcagcactaagtgatttgagaagtcgttcatctc |
229 |
Q |
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| T |
3400217 |
aaagcatgccaacagaaaagttcaagggactggtcttcgtccatttctgtcattgtgaagatatggtcaccactaagtgatttgagaaggcgtccatctc |
3400316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 229
Target Start/End: Complemental strand, 31174331 - 31174232
Alignment:
| Q |
130 |
aaagcatgccatctgaaaagttcaagtgactggttttcgtccatttctaccattgtgaagacatggtcagcactaagtgatttgagaagtcgttcatctc |
229 |
Q |
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| T |
31174331 |
aaagcatgccaacagaaaagttcaagggactggtatttgtccatttccgtcattgtgaagatatggtcgtcactaagtgagttgagaaggcgtgcatctc |
31174232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 8373327 - 8373388
Alignment:
| Q |
130 |
aaagcatgccatctgaaaagttcaagtgactggttttcgtccatttctaccattgtgaagac |
191 |
Q |
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||||||||||| |||||||||||||| |||| ||||| |||||||| | |||||||||||| |
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| T |
8373327 |
aaagcatgccagctgaaaagttcaagggactcgtttttatccatttcaatcattgtgaagac |
8373388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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