View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2173_low_4 (Length: 436)
Name: NF2173_low_4
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2173_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 10825381 - 10825685
Alignment:
| Q |
18 |
aagagtaaacttgtttaaagttaatcatcaaaataaatcatagataattttctcaagtagctcattcatttcaaacctgatgcaaagatgaggaaagcca |
117 |
Q |
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| T |
10825381 |
aagagtaaacttgtttaaagttaatcattaaaataaatcatagataattttctcaagtagctcattcatttcaaacctgatgcaaagatgaggaaagcca |
10825480 |
T |
|
| Q |
118 |
ataaatatacgattacaagagcactaatctttgtacttgcagtacccatcttgtaaatataacatattataagttatacatg--tggtatttatatatgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10825481 |
ataaatatacgattacaagagcactaatctttgtacttgcagtacccatcttataaatataacatattataagttatacatgtctggtatttatatatgc |
10825580 |
T |
|
| Q |
216 |
atatggtgagactccaccttgaccatcttaattgttttctattaacataataaattaaaaaagatacgtttactttatttaataaagaaattactttaat |
315 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10825581 |
atatggtgagacttcaccttgaccgtcttaattgttttctattaacataataaattaaaaaagatacgtttactttatttaataaagaaattactttaat |
10825680 |
T |
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| Q |
316 |
acatt |
320 |
Q |
| |
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||||| |
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| T |
10825681 |
acatt |
10825685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 10803209 - 10803441
Alignment:
| Q |
18 |
aagagtaaacttgtttaaagttaatcatcaaaataaatcatagataattttct-caagtagctcattcatttcaaacctgatgcaaagatgaggaaagcc |
116 |
Q |
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|||||||||||||||||||||||| |||| ||| || |||| |||||||| | || | | ||||| |||||||||||||||||||||| ||||||| |
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| T |
10803209 |
aagagtaaacttgtttaaagttaaatatcataatcaagcatatataattttttgcactttgttcatttgtttcaaacctgatgcaaagatggtgaaagcc |
10803308 |
T |
|
| Q |
117 |
aataaatatacgattacaagagcactaatctttgtacttgcagtacccatcttgtaaatataacatattataagttatacatgtgg--tatttatatatg |
214 |
Q |
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||||| |||| ||| ||||||| |||||||||| || |||||||| ||||||||||||||||| |||||||| |||||||||| | |
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| T |
10803309 |
aataagtatatcgttatgagagcacaaatctttgta------gtgtccatcttgaaaatataacatattatac---atacatgtatattatttatatacg |
10803399 |
T |
|
| Q |
215 |
catatggtgagactccaccttgaccatcttaattgttttcta |
256 |
Q |
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|||||||||||||||||||||||| | |||||| ||||||| |
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| T |
10803400 |
catatggtgagactccaccttgactgtattaattattttcta |
10803441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 10810025 - 10810239
Alignment:
| Q |
18 |
aagagtaaacttgtttaaagttaatcatcaaaataaatcatagataattttct-caagtagctcattcatttcaaacctgatgcaaagatgaggaaagcc |
116 |
Q |
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|||||||||||||||||||| ||| |||| ||| || || | |||||||| | || | | ||||| |||||||||||||||||||||| ||||||| |
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| T |
10810025 |
aagagtaaacttgtttaaagctaaatatcataatcaagcaaatataattttttgcactttgttcatttgtttcaaacctgatgcaaagatggtgaaagcc |
10810124 |
T |
|
| Q |
117 |
aataaatatacgattacaagagcactaatctttgtacttgcagtacccatcttgtaaatataacatattataagttatacatgtgg--tatttatatatg |
214 |
Q |
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||||| |||| ||| ||||||| |||||||||| || |||||||| ||||||||||||||||| |||||||| |||||||||| | |
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| T |
10810125 |
aataagtatatcgttatgagagcacaaatctttgta------gtgtccatcttgaaaatataacatattatac---atacatgtatattatttatatacg |
10810215 |
T |
|
| Q |
215 |
catatggtgagactccaccttgac |
238 |
Q |
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|||||||||||||||||||||||| |
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| T |
10810216 |
catatggtgagactccaccttgac |
10810239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 11059080 - 11059123
Alignment:
| Q |
203 |
tatttatatatgcatatggtgagactccaccttgaccatcttaa |
246 |
Q |
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|||||||||||| ||||||||||||| |||||||||||| |||| |
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|
| T |
11059080 |
tatttatatatggatatggtgagactgcaccttgaccatattaa |
11059123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 11076606 - 11076648
Alignment:
| Q |
204 |
atttatatatgcatatggtgagactccaccttgaccatcttaa |
246 |
Q |
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||||||||||| ||||||||||||| |||||||||||| |||| |
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| T |
11076606 |
atttatatatggatatggtgagactgcaccttgaccatattaa |
11076648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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