View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2173_low_6 (Length: 397)
Name: NF2173_low_6
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2173_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 386
Target Start/End: Original strand, 1681056 - 1681426
Alignment:
| Q |
16 |
attttccaccaactcagagaggtaatcagaaagatgcctgtgactaactccttgtaaattgtaatagttgggattctgggtgagacgcctgtacatgaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1681056 |
attttccaccaactcagagaggtaatcagaaagatgcctgtgactaactccttgtaaattgtaatagttgggattctgggtgagacgcctgtacatgaat |
1681155 |
T |
|
| Q |
116 |
gtccatgtaagataatctacagcgtcttgcttgttttcaataattccagcaacaatttcagcattcaaattatcatgtaaaaagtgatgaagatgacttt |
215 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1681156 |
gtccatgtaagataatctacatcgtcttgcttgttttcaataattccagcaacaatttcagcattcatattatcatgtaaaaagtgatgaagatgacttt |
1681255 |
T |
|
| Q |
216 |
caaccgggaatgcttcgaacaaaaactttttgtaatactccttagaaggtgcatggcataagatgacacactttccagaatggtccaccaaaggacgact |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1681256 |
caaccgggaatgcttcgaacaaaaactttttgtaatactccttagaaggtgcatggcataagatgacacactttccagaatggtccaccaaaggacgact |
1681355 |
T |
|
| Q |
316 |
ggcatgacccatcatctgcagaagatcagtaacagggtagtctgtctgtgcattccccccatcatagtatt |
386 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1681356 |
ggcatgacccatcatctgcagaagatcagtaacagggtagtctgtctgtgcattctccccatcatagtatt |
1681426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 384
Target Start/End: Complemental strand, 2799672 - 2799304
Alignment:
| Q |
16 |
attttccaccaactcagagaggtaatcagaaagatgcctgtgactaactccttgtaaattgtaatagttgggattctgggtgagacgcctgtacatgaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2799672 |
attttccaccaactcagagaggtaatcagaaagatgcctgtgactaactccttgtaaattgtaatagttgggattctgggtgagacgcctgtacatgaat |
2799573 |
T |
|
| Q |
116 |
gtccatgtaagataatctacagcgtcttgcttgttttcaataattccagcaacaatttcagcattcaaattatcatgtaaaaagtgatgaagatgacttt |
215 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2799572 |
gtccatgtaagataatcaacaacgtcttgcttgttttcaataattccagcaacaatttcagcattcaaattatcatgtaaaaagtgatgaagatgacttt |
2799473 |
T |
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| Q |
216 |
caaccgggaatgcttcgaacaaaaactttttgtaatactccttagaaggtgcatggcataagatgacacactttccagaatggtccaccaaaggacgact |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2799472 |
caaccgggaatgcttcgaacaaaaactttttgtaatactccttagaaggtgcatggcataagatgacacactttccagaatggtccaccaaaggacgact |
2799373 |
T |
|
| Q |
316 |
ggcatgacccatcatctgcagaagatcagtaacagggtagtctgtctgtgcattccccccatcatagta |
384 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2799372 |
ggcatgacccatcatctgcagaagatcagtaacagggtagtctgtctgtgcattctccccatcatagta |
2799304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 370
Target Start/End: Complemental strand, 29268848 - 29268494
Alignment:
| Q |
16 |
attttccaccaactcagagaggtaatcagaaagatgcctgtgactaactccttgtaaattgtaatagttgggattctgggtgagacgcctgtacatgaat |
115 |
Q |
| |
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||||||||||| ||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |
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| T |
29268848 |
attttccaccatctctgagaggtggtcagaaagatgtctgtgacttactccttgtaaattgtaatagttgggattctgtgtgagcctcctgtacatgaat |
29268749 |
T |
|
| Q |
116 |
gtccatgtaagataatctacagcgtcttgcttgttttcaataattccagcaacaatttcagcattcaaattatcatgtaaaaagtgatgaagatgacttt |
215 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| || || || || |||||||||||||| |||| |
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| T |
29268748 |
gtccatgtaagataatcaacagcatcttgcttgttttcaataatcccagcaacaatttcagcattcaagttgtcgtgcaagaagtgatgaagatggcttt |
29268649 |
T |
|
| Q |
216 |
caaccgggaatgcttcgaacaaaaactttttgtaatactccttagaaggtgcatggcataagatgacacactttccagaatggtccaccaaaggacgact |
315 |
Q |
| |
|
|||| ||||||||||| ||| |||||| ||||| ||||| || |||||| ||||||||||||||||| |||||||||| ||| || |||||||| || |
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| T |
29268648 |
caactgggaatgcttcatacagaaacttcttgtagtactctttgcgaggtgcgtggcataagatgacacattttccagaattgtctactaaaggacggct |
29268549 |
T |
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| Q |
316 |
ggcatgacccatcatctgcagaagatcagtaacagggtagtctgtctgtgcattc |
370 |
Q |
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||||||||||||||| ||||| | ||||||||||||||| |||||||| |||||| |
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| T |
29268548 |
ggcatgacccatcatttgcagcaaatcagtaacagggtaatctgtctgggcattc |
29268494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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