View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2173_low_7 (Length: 394)

Name: NF2173_low_7
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2173_low_7
NF2173_low_7
[»] chr2 (10 HSPs)
chr2 (14-241)||(10509090-10509313)
chr2 (258-384)||(10508971-10509097)
chr2 (297-384)||(10464766-10464853)
chr2 (309-384)||(10546918-10546993)
chr2 (306-384)||(10494363-10494441)
chr2 (304-384)||(10476044-10476124)
chr2 (221-253)||(15305601-15305633)
chr2 (305-384)||(7478921-7479000)
chr2 (220-252)||(4026762-4026794)
chr2 (308-384)||(10519641-10519717)
[»] chr5 (3 HSPs)
chr5 (220-254)||(35445998-35446032)
chr5 (220-253)||(12554407-12554440)
chr5 (221-253)||(16458072-16458104)
[»] chr1 (4 HSPs)
chr1 (220-254)||(17830097-17830131)
chr1 (224-254)||(37473342-37473372)
chr1 (219-252)||(29904704-29904737)
chr1 (224-256)||(15609033-15609065)
[»] chr8 (2 HSPs)
chr8 (220-254)||(1058167-1058201)
chr8 (221-253)||(32976004-32976036)
[»] chr6 (2 HSPs)
chr6 (220-254)||(8147645-8147679)
chr6 (221-253)||(30536422-30536454)
[»] chr4 (3 HSPs)
chr4 (220-254)||(31851397-31851431)
chr4 (220-252)||(42321972-42322004)
chr4 (221-253)||(43505900-43505932)
[»] chr3 (1 HSPs)
chr3 (224-254)||(20880420-20880450)
[»] chr7 (1 HSPs)
chr7 (221-253)||(45806420-45806452)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 10509313 - 10509090
Alignment:
Q  14 gaagctagaaaacaagttctgaaaagtgaaaaatactatgaatcttttgtcaaacaagagtcatggaagagtactcgtagggatttgaacttgaaggaag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10509313 gaagctagaaaacaagttctgaaaagtgaaaaatactatgaatcttttgtcaaacaagagtcatggaagagtactcgtagggatttgaacttgaaggaag 10509214  T
Q  114 gtgactcccattctcactgtaaatggatctacaatccaacttccgattctatccctgctgatgttaccttcttcaactggaggaaacactacaaggtata 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10509213 gtgactcccattctcactgtaaatggatctacaatccaacttccgattctatccctgctgatgttaccttcttcaactggaggaaacactacaaggtata 10509114  T
Q  214 actttatttattttatcatttgctataa 241  Q
    |||||    |||||||||||||||||||    
T  10509113 acttt----attttatcatttgctataa 10509090  T

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Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 258 - 384
Target Start/End: Complemental strand, 10509097 - 10508971
Alignment:
Q  258 tgctataagctgtttatccaagcatgcctattcttcatcatttgtctgtccttgcagatgagcgtaattgacacaccttcttgtgttgatttcactcctg 357  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10509097 tgctataagctgtttatccaagcatgcctattcttcatcatttttctgtccttgcagatgagcgtaattgacacacctgcttgtgttgatttcactcctg 10508998  T
Q  358 aggttgacaatgctctgcgtgcctttg 384  Q
    |||||||||||||||||||||||||||    
T  10508997 aggttgacaatgctctgcgtgcctttg 10508971  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 384
Target Start/End: Complemental strand, 10464853 - 10464766
Alignment:
Q  297 atttgtctgtccttgcagatgagcgtaattgacacaccttcttgtgttgatttcactcctgaggttgacaatgctctgcgtgcctttg 384  Q
    ||||||||||||||||||||||  |||||||||||||||  |  |||||||||||||||||||||| | ||||| |||||||||||||    
T  10464853 atttgtctgtccttgcagatgactgtaattgacacacctgatcatgttgatttcactcctgaggttcagaatgcgctgcgtgcctttg 10464766  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 384
Target Start/End: Complemental strand, 10546993 - 10546918
Alignment:
Q  309 ttgcagatgagcgtaattgacacaccttcttgtgttgatttcactcctgaggttgacaatgctctgcgtgcctttg 384  Q
    |||||||||||||||||||||||||||  ||||||||| |||||| |||||||||| |||||||| ||||||||||    
T  10546993 ttgcagatgagcgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctacgtgcctttg 10546918  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 10494441 - 10494363
Alignment:
Q  306 tccttgcagatgagcgtaattgacacaccttcttgtgttgatttcactcctgaggttgacaatgctctgcgtgcctttg 384  Q
    ||||||||||||| ||| |||||||||||| || |||||||||||||| |||||||| | ||||||||| |||||||||    
T  10494441 tccttgcagatgaccgtgattgacacacctgctcgtgttgatttcactactgaggttaagaatgctctgtgtgcctttg 10494363  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 10476124 - 10476044
Alignment:
Q  304 tgtccttgcagatgagcgtaattgacacaccttcttgtgttgatttcactcctgaggttgacaatgctctgcgtgcctttg 384  Q
    |||| ||||||||||| ||  |||||||||||  |  ||||||||||||| |||||||| | |||||||||||||||||||    
T  10476124 tgtcattgcagatgagtgtgcttgacacacctgataatgttgatttcactgctgaggttcagaatgctctgcgtgcctttg 10476044  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 15305633 - 15305601
Alignment:
Q  221 ttattttatcatttgctataaaaatagcttatg 253  Q
    |||||||||||||||||||||||||||||||||    
T  15305633 ttattttatcatttgctataaaaatagcttatg 15305601  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 384
Target Start/End: Original strand, 7478921 - 7479000
Alignment:
Q  305 gtccttgcagatgagcgtaattgacacaccttcttgtgttgatttcactcctgaggttgacaatgctctgcgtgcctttg 384  Q
    ||||||||||||||  || ||||||||||||  |  ||||||||||||| |||||||| | | |||||||| ||||||||    
T  7478921 gtccttgcagatgactgtgattgacacacctgttcatgttgatttcactgctgaggttaagagtgctctgcctgcctttg 7479000  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 4026794 - 4026762
Alignment:
Q  220 tttattttatcatttgctataaaaatagcttat 252  Q
    ||||||||||| |||||||||||||||||||||    
T  4026794 tttattttatcttttgctataaaaatagcttat 4026762  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 384
Target Start/End: Complemental strand, 10519717 - 10519641
Alignment:
Q  308 cttgcagatgagcgtaattgacacaccttcttgtgttgatttcactcctgaggttgacaatgctctgcgtgcctttg 384  Q
    ||||||||||||| |||| |||||| ||  |||| ||||||||||  |||| ||| | ||||||||| |||||||||    
T  10519717 cttgcagatgagcataatggacacaactaattgttttgatttcacctctgaagttaagaatgctctgggtgcctttg 10519641  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 35446032 - 35445998
Alignment:
Q  220 tttattttatcatttgctataaaaatagcttatgt 254  Q
    |||||||||||||||||||||||||||||||||||    
T  35446032 tttattttatcatttgctataaaaatagcttatgt 35445998  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 12554440 - 12554407
Alignment:
Q  220 tttattttatcatttgctataaaaatagcttatg 253  Q
    ||||||||||||||| ||||||||||||||||||    
T  12554440 tttattttatcatttactataaaaatagcttatg 12554407  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 16458072 - 16458104
Alignment:
Q  221 ttattttatcatttgctataaaaatagcttatg 253  Q
    |||||||||| ||||||||||||||||||||||    
T  16458072 ttattttatcttttgctataaaaatagcttatg 16458104  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 17830131 - 17830097
Alignment:
Q  220 tttattttatcatttgctataaaaatagcttatgt 254  Q
    |||||||||||||||||||||||||||||||||||    
T  17830131 tttattttatcatttgctataaaaatagcttatgt 17830097  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 254
Target Start/End: Complemental strand, 37473372 - 37473342
Alignment:
Q  224 ttttatcatttgctataaaaatagcttatgt 254  Q
    |||||||||||||||||||||||||||||||    
T  37473372 ttttatcatttgctataaaaatagcttatgt 37473342  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 29904737 - 29904704
Alignment:
Q  219 atttattttatcatttgctataaaaatagcttat 252  Q
    |||||||||||| |||||||||||||||||||||    
T  29904737 atttattttatcttttgctataaaaatagcttat 29904704  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 15609065 - 15609033
Alignment:
Q  224 ttttatcatttgctataaaaatagcttatgtct 256  Q
    ||||||| |||||||||||||||||||||||||    
T  15609065 ttttatcttttgctataaaaatagcttatgtct 15609033  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 1058167 - 1058201
Alignment:
Q  220 tttattttatcatttgctataaaaatagcttatgt 254  Q
    |||||||||| ||||||||||||||||||||||||    
T  1058167 tttattttatgatttgctataaaaatagcttatgt 1058201  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 32976036 - 32976004
Alignment:
Q  221 ttattttatcatttgctataaaaatagcttatg 253  Q
    |||||||||| ||||||||||||||||||||||    
T  32976036 ttattttatcttttgctataaaaatagcttatg 32976004  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 8147679 - 8147645
Alignment:
Q  220 tttattttatcatttgctataaaaatagcttatgt 254  Q
    ||||||||||| |||||||||||||||||||||||    
T  8147679 tttattttatcttttgctataaaaatagcttatgt 8147645  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 30536454 - 30536422
Alignment:
Q  221 ttattttatcatttgctataaaaatagcttatg 253  Q
    ||||||||||||||||||||| |||||||||||    
T  30536454 ttattttatcatttgctataataatagcttatg 30536422  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 31851431 - 31851397
Alignment:
Q  220 tttattttatcatttgctataaaaatagcttatgt 254  Q
    |||||||||||||||| ||||||||||||||||||    
T  31851431 tttattttatcatttgttataaaaatagcttatgt 31851397  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 42321972 - 42322004
Alignment:
Q  220 tttattttatcatttgctataaaaatagcttat 252  Q
    |||||||||||||||| ||||||||||||||||    
T  42321972 tttattttatcatttgttataaaaatagcttat 42322004  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 43505932 - 43505900
Alignment:
Q  221 ttattttatcatttgctataaaaatagcttatg 253  Q
    |||||||||| ||||||||||||||||||||||    
T  43505932 ttattttatcttttgctataaaaatagcttatg 43505900  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 254
Target Start/End: Complemental strand, 20880450 - 20880420
Alignment:
Q  224 ttttatcatttgctataaaaatagcttatgt 254  Q
    |||||||||||||||||||||||||||||||    
T  20880450 ttttatcatttgctataaaaatagcttatgt 20880420  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 45806420 - 45806452
Alignment:
Q  221 ttattttatcatttgctataaaaatagcttatg 253  Q
    |||||||||| ||||||||||||||||||||||    
T  45806420 ttattttatcttttgctataaaaatagcttatg 45806452  T

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