View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2173_low_9 (Length: 380)
Name: NF2173_low_9
Description: NF2173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2173_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 4364562 - 4364918
Alignment:
| Q |
19 |
agaacaggcactgaatcacatcccaatgaaatgtattctggattcctcctccctaatttgtctgtgtaaactagctcagggttcttccttatttcttcta |
118 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||| | ||||||||||||||| |||||||||| |
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| T |
4364562 |
agaacaggcactgaatcacatcccaatgagatgtattctggatttcttcttcctaatttgtctgtgtaaaccaactcagggttcttcctgatttcttcta |
4364661 |
T |
|
| Q |
119 |
gcacccatggtggtagaggaatgctaaagagatgcaata-aaacaaaattagtctttgannnnnnnnnnnn--ggtctagttgaatattttgtttaacaa |
215 |
Q |
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|||||||||||||||||||||||||| | | |||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4364662 |
gcacccatggtggtagaggaatgctataaa-atgcaatacaaaccaaattagtctttgattttttttatttttggtctagttgaatattttgtttaacaa |
4364760 |
T |
|
| Q |
216 |
gagtgatagatatttgcatacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaaccatgtttttgtacca |
315 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4364761 |
gagtgatagatatttccatacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaaccatgtttttgtacca |
4364860 |
T |
|
| Q |
316 |
tctgaacaagctcagcataagcttcccaattatacttcattggaccatattcttcgac |
373 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
4364861 |
tctgaacaagttcagcataagcttcccaattatacttcattggaccatctttttcgac |
4364918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 4372154 - 4372511
Alignment:
| Q |
19 |
agaacaggcactgaatcacatcccaatgaaatgtattctggattcctcctccctaatttgtctgtgtaaactagctcagggttcttccttatttcttcta |
118 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||| | ||||||||||||||| |||||||||| |
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| T |
4372154 |
agaacaggcactgaatcacatcccaatgagatgtattctggatttcttcttcctaatttgtctgtgtaaaccaactcagggttcttcctgatttcttcta |
4372253 |
T |
|
| Q |
119 |
gcacccatggtggtagaggaatgctaaagagatgcaata-aaacaaaattagtctttgannnnnnnnnnnn---ggtctagttgaatattttgtttaaca |
214 |
Q |
| |
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|||||||||||||||||||||||||| | | |||||||| |||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
4372254 |
gcacccatggtggtagaggaatgctataaa-atgcaatacaaaccaaattagtctttgatttttttttatttttggtctagttgaatattttgtttaaca |
4372352 |
T |
|
| Q |
215 |
agagtgatagatatttgcatacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaaccatgtttttgtacc |
314 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372353 |
agagtgatagatatttccatacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaaccatgtttttgtacc |
4372452 |
T |
|
| Q |
315 |
atctgaacaagctcagcataagcttcccaattatacttcattggaccatattcttcgac |
373 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||| |
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|
| T |
4372453 |
atctgaacaagttcagcataagcttcccaattatacttcattggaccatctttttcgac |
4372511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 232 - 352
Target Start/End: Complemental strand, 41042773 - 41042653
Alignment:
| Q |
232 |
catacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaaccatgtttttgtaccatctgaacaagctcagc |
331 |
Q |
| |
|
|||||||||| || || ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||| ||||||||||| |
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| T |
41042773 |
catacctgcaggaatctccaacatttcctccacactgatgaaaagacataacaacttgaagcttcaaaccatgcaattgcaccatctgcacaagctcagc |
41042674 |
T |
|
| Q |
332 |
ataagcttcccaattatactt |
352 |
Q |
| |
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|||||||||||| |||||||| |
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| T |
41042673 |
ataagcttcccagttatactt |
41042653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 41042992 - 41042872
Alignment:
| Q |
19 |
agaacaggcactgaatcacatcccaatgaaatgtattctggattcctcctccctaatttgtctgtgtaaactagctcagggttcttccttatttcttcta |
118 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| || ||||| ||||||||| || ||||||||||||| | ||||||||||| || || ||||| | |
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| T |
41042992 |
agaacaggcactgaatcacatcccaatgatatgtactcaggatttctcctccctgatctgtctgtgtaaacaatgtcagggttcttgctgatctcttcca |
41042893 |
T |
|
| Q |
119 |
gcacccatggtggtagaggaa |
139 |
Q |
| |
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||||||||| |||||||||| |
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| T |
41042892 |
tcacccatggaggtagaggaa |
41042872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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