View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2174_high_1 (Length: 751)

Name: NF2174_high_1
Description: NF2174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2174_high_1
NF2174_high_1
[»] chr2 (1 HSPs)
chr2 (1-733)||(42960477-42961213)
[»] chr5 (2 HSPs)
chr5 (216-382)||(35607889-35608055)
chr5 (139-296)||(8309412-8309561)
[»] chr8 (3 HSPs)
chr8 (464-719)||(5503504-5503759)
chr8 (226-303)||(11791979-11792056)
chr8 (226-291)||(29858345-29858410)
[»] chr6 (5 HSPs)
chr6 (226-293)||(7712361-7712428)
chr6 (141-197)||(29246407-29246463)
chr6 (230-292)||(10890479-10890538)
chr6 (218-280)||(473905-473967)
chr6 (227-292)||(12117149-12117214)
[»] chr7 (2 HSPs)
chr7 (218-291)||(3182435-3182508)
chr7 (234-293)||(37702076-37702135)
[»] chr3 (2 HSPs)
chr3 (226-302)||(13873370-13873445)
chr3 (239-292)||(32783461-32783514)
[»] chr4 (2 HSPs)
chr4 (234-293)||(56081265-56081324)
chr4 (141-198)||(40829662-40829719)
[»] chr1 (1 HSPs)
chr1 (247-302)||(2443403-2443458)


Alignment Details
Target: chr2 (Bit Score: 688; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 1 - 733
Target Start/End: Original strand, 42960477 - 42961213
Alignment:
Q  1 ccaatctggtttatcatgaaaggaaaaatcacttctatgcatgttacttgttagtttctattttactattcaatgctcgtatagacattgcacgccttgt 100  Q
    ||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42960477 ccaatctggtttatcatgaaatgaaaaattacttctatgcatattacttgttagtttctattttactattcaatgctcgtatagacgttgcacgccttgt 42960576  T
Q  101 tgattgtgctcggtaaatggttaatgacttccagcatcgcggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  42960577 tgattgtgctcggtaaatggttaatgacttccagcatcgtggttaattgtgttcggtaaatggttaatgagttgcgacatcttgtaatattcattaatta 42960676  T
Q  201 accatat----actaaacttgattagccgcatatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataaca 296  Q
    |||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42960677 accatatatatactaaacttgattagccgcatatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttgtgtgtcaaaataaca 42960776  T
Q  297 aaactcaaattaggtgatgagtgaagacatacctcagctgatagcaaaccatggtggcaatgaatgctatcattggtctgtccaaatccacagctagctt 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960777 aaactcaaattaggtgatgagtgaagacatacctcagctgatagcaaaccatggtggcaatgaatgctatcattggtctgtccaaatccacagctagctt 42960876  T
Q  397 caatatacacacccttattggtaataccaactgtttctatcaatgattgtttaactgatttcttaagaggaacaaaaattgtgttcattggattatcagc 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960877 caatatacacacccttattggtaataccaactgtttctatcaatgattgtttaactgatttcttaagaggaacaaaaattgtgttcattggattatcagc 42960976  T
Q  497 catacccttcccaacaaatctgttgtcaagtaccacagggattttcaagttctcaagttctgcttttgggccaattccactgagtaatagcatttgagga 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960977 catacccttcccaacaaatctgttgtcaagtaccacagggattttcaagttctcaagttctgcttttgggccaattccactgagtaatagcatttgagga 42961076  T
Q  597 gttccaattgccccactagacacaatcacttcactctccctatcatttcctagtattgccttatgctgtttcccattttcatccttgaaaatcaccccca 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42961077 gttccaattgccccactagacacaatcacttcactctccctatcatttcctagtattgccttatgctgtttcccattttcatccttgaaaatcaccccca 42961176  T
Q  697 ttgcttttggtctttttcctgcaccaatatttagcat 733  Q
    |||||||||||||||||||||||||||||||||||||    
T  42961177 ttgcttttggtctttttcctgcaccaatatttagcat 42961213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 3e-53; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 216 - 382
Target Start/End: Complemental strand, 35608055 - 35607889
Alignment:
Q  216 tgattagccgcatatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactcaaattaggtgatg 315  Q
    |||||| | |||||||||||||||||||||||||||||||||| | ||||||||||| ||| ||| ||||| ||||| | | ||||||||||||||||||    
T  35608055 tgattaactgcatatttgaactatgttaaccatctaatttgttctagaaatttaatgtcaattttgtgtgtgaaaattaaacaactcaaattaggtgatg 35607956  T
Q  316 agtgaagacatacctcagctgatagcaaaccatggtggcaatgaatgctatcattggtctgtccaaa 382  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||||||||||    
T  35607955 agtgaagacatatctcagctgacaacaaaccatggtggcaatgaatgctgtcattggtctgtccaaa 35607889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 296
Target Start/End: Complemental strand, 8309561 - 8309412
Alignment:
Q  139 gcggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaattaaccatatactaaacttgattagccgcatatttgaacta 238  Q
    ||||||||||||| ||||||||||||||  ||||||||| |||||||  |||||||||||    ||| || |  || | |||| || |||| ||||| |     
T  8309561 gcggttaattgtgctcggtgaatggttagtgagttgcgatatcttgt--tattcattaat----catctattggacataattaaccacataattgaattt 8309468  T
Q  239 tgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataaca 296  Q
    ||||||||||||| |||| ||| ||||||| ||| ||||  |||||||||||||||||    
T  8309467 tgttaaccatctattttgctgttgaaatttgatgtcaaa--tttgtgtcaaaataaca 8309412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 464 - 719
Target Start/End: Complemental strand, 5503759 - 5503504
Alignment:
Q  464 aggaacaaaaattgtgttcattggattatcagccatacccttcccaacaaatctgttgtcaagtaccacagggattttcaagttctcaagttctgctttt 563  Q
    ||||||||||| ||||||||| ||||||||   ||| ||||||||||||||    |||| ||| ||||| | ||| |||||||||| ||||||  ||||     
T  5503759 aggaacaaaaactgtgttcataggattatctatcattcccttcccaacaaaaggattgttaaggaccactgagatgttcaagttctgaagttcatcttta 5503660  T
Q  564 gggccaattccactgagtaatagcatttgaggagttccaattgccccactagacacaatcacttcactctccctatcatttcctagtattgccttatgct 663  Q
    || ||||||||||| || ||||||||||||||||  |||||||||||||||||||  ||||||||||| | | |||||||||| |   |||||| ||| |    
T  5503659 ggaccaattccacttagcaatagcatttgaggagacccaattgccccactagacaatatcacttcactttgcatatcatttcccaaccttgcctcatgtt 5503560  T
Q  664 gtttcccattttcatccttgaaaatcacccccattgcttttggtctttttcctgca 719  Q
    |||||||||||||||| |||||||| ||||| |||||||||||||| || ||||||    
T  5503559 gtttcccattttcatcattgaaaataacccctattgcttttggtctcttacctgca 5503504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 11792056 - 11791979
Alignment:
Q  226 catatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactca 303  Q
    ||||| |||| | |||||||| ||||||||||||||||||||| ||| |||||| || ||||||||| ||| ||||||    
T  11792056 catatgtgaattgtgttaaccgtctaatttgttgtcgaaatttgatgtcaaattcttatgtcaaaatcacacaactca 11791979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 29858410 - 29858345
Alignment:
Q  226 catatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaa 291  Q
    |||||||||| |||||||||| ||||| |||  |||||||||| ||| ||||||||||| ||||||    
T  29858410 catatttgaattatgttaaccttctaaattgacgtcgaaatttgatgtcaaatttttgtttcaaaa 29858345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 7712361 - 7712428
Alignment:
Q  226 catatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaata 293  Q
    |||||||||||||||||||||||||||  ||||||||||||||  |  ||||||  ||||||||||||    
T  7712361 catatttgaactatgttaaccatctaaactgttgtcgaaatttgttatcaaattcgtgtgtcaaaata 7712428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 29246407 - 29246463
Alignment:
Q  141 ggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaa 197  Q
    |||||||| ||||| ||| |||||||| ||||||||||| ||||| |||||||||||    
T  29246407 ggttaattatgttcagtgtatggttaatgagttgcgacaccttgttatattcattaa 29246463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 10890479 - 10890538
Alignment:
Q  230 tttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaat 292  Q
    |||||||| ||||||||||||| ||||||||||||| |||||| ||||  |||||||||||||    
T  10890479 tttgaactctgttaaccatctagtttgttgtcgaaa-ttaatgtcaaa--tttgtgtcaaaat 10890538  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 473905 - 473967
Alignment:
Q  218 attagccgcatatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaattt 280  Q
    ||||||| ||||| | ||||||||||| |||||||||||| || ||||||| ||| |||||||    
T  473905 attagccacatatgtaaactatgttaatcatctaatttgtggttgaaatttcatgtcaaattt 473967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 12117149 - 12117214
Alignment:
Q  227 atatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaat 292  Q
    ||||||||||||  |||||||| ||| ||||||| ||| ||| ||| ||||||| |||||||||||    
T  12117149 atatttgaactacattaaccatataaattgttgttgaagtttgatgtcaaatttgtgtgtcaaaat 12117214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 3182508 - 3182435
Alignment:
Q  218 attagccgcatatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaa 291  Q
    ||||||| ||||||| |||||  |||||||||||| | |||||||||||||  || ||||||||||| ||||||    
T  3182508 attagccacatattttaactaccttaaccatctaaatagttgtcgaaatttgttgtcaaatttttgtatcaaaa 3182435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 37702076 - 37702135
Alignment:
Q  234 aactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaata 293  Q
    |||||| | ||| |||||||||||||| ||||||| ||||||||||| ||| ||||||||    
T  37702076 aactatatcaactatctaatttgttgttgaaatttgatgacaaatttgtgtttcaaaata 37702135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 13873445 - 13873370
Alignment:
Q  226 catatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactc 302  Q
    ||||||| |||||||||||| || || ||| |||||||| ||||||| | ||||||||||||||| ||||| |||||    
T  13873445 catatttaaactatgttaacaatttagttttttgtcgaattttaatgtc-aatttttgtgtcaaagtaacacaactc 13873370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 32783461 - 32783514
Alignment:
Q  239 tgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaat 292  Q
    |||||||| ||||||||||||| ||||||| | | ||||||| |||||||||||    
T  32783461 tgttaaccgtctaatttgttgttgaaatttgaagtcaaatttgtgtgtcaaaat 32783514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 56081265 - 56081324
Alignment:
Q  234 aactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaata 293  Q
    |||| |||||| ||||||| |||||||| || ||| ||| ||||||||||||||||||||    
T  56081265 aactgtgttaatcatctaaattgttgtcaaatttttatgtcaaatttttgtgtcaaaata 56081324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 40829662 - 40829719
Alignment:
Q  141 ggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaat 198  Q
    ||||||||||| || ||| |||||||| ||||||| ||| ||||| ||||||||||||    
T  40829662 ggttaattgtgctcagtggatggttaatgagttgctacaccttgttatattcattaat 40829719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 2443458 - 2443403
Alignment:
Q  247 atctaatttgttgtcgaaatttaatgacaaatttttgtgtcaaaataacaaaactc 302  Q
    |||||||||| ||||||||||| |||   ||||||||||||||||||||| |||||    
T  2443458 atctaatttggtgtcgaaatttgatgttgaatttttgtgtcaaaataacacaactc 2443403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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