View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2174_high_12 (Length: 238)
Name: NF2174_high_12
Description: NF2174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2174_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35355458 - 35355238
Alignment:
| Q |
1 |
tctcttcttttgtttatgctaatagtctgttagttagtacttaactattagtttgttagtgcctatttaataggctcgatgtcattataattgtactact |
100 |
Q |
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| T |
35355458 |
tctcttcttttgtttatgctaatagtctgttggttagtacttaactattagtttgttagtgcctatttaataggctcgatgtcattataattgtactact |
35355359 |
T |
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| Q |
101 |
tttttccatttctaacattttacttttatgaatacaaaaaagtgttaagttttgatggttttaaaggttattgtggcctgtatcggttgcatttgtttgc |
200 |
Q |
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| T |
35355358 |
tttttccatttctaacattttacttttatgaatacaaaaaagtgttaagttttgat-gttttaaaggttattgtggcctgtatcggttgcatttgtttgc |
35355260 |
T |
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| Q |
201 |
atttttctacaatgtcaaaatt |
222 |
Q |
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| T |
35355259 |
atttttctacaatgtcaaaatt |
35355238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 35343775 - 35343873
Alignment:
| Q |
56 |
ttagtgcctatttaataggctcgatgtcattataattgtactacttttttccatttctaacattttacttttatgaatacaaaaaagtgttaagttttga |
155 |
Q |
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| T |
35343775 |
ttagtgcctata-aataggtttgatgtcattataattgtactgcttttttccgtttctaacattttacttttatcaatacaaaagagtgttaagttttga |
35343873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 35348441 - 35348490
Alignment:
| Q |
34 |
ttagtacttaactattagtttgttagtgcctatttaataggctcgatgtca |
84 |
Q |
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| T |
35348441 |
ttagtacttaactatttgtttgttagtgcct-gtaaataggctcgatgtca |
35348490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 35371424 - 35371372
Alignment:
| Q |
34 |
ttagtacttaactattagtttgttagtgcctatttaataggctcgatgtcatta |
87 |
Q |
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| T |
35371424 |
ttagtacttaactattagtttgttattgctta-taaataggctagatgtcatta |
35371372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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