View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2174_high_4 (Length: 373)
Name: NF2174_high_4
Description: NF2174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2174_high_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 33699360 - 33699712
Alignment:
| Q |
18 |
ctattaggccatttgttaaactacaaggatgaaaaagggaaaatgttaagtgatgaggaagttgctgataatgtgattggagtactatttgcagctcaag |
117 |
Q |
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| T |
33699360 |
ctattaggccatttgttaaactacaaggatgaaaaagggaaaatgttaagtgatgaggaagttgctgataatgtgattggagtactatttgcagctcaag |
33699459 |
T |
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| Q |
118 |
atactacagcaagtgttcttacttggattctcaagtatcttcatgatcaccagaaacttcttgaagccataaaagtaagtgtttttgtctccatcatgga |
217 |
Q |
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| T |
33699460 |
atactacagcaagtgttcttacttggattctcaagtatcttcatgatcaccagaaacttcttgaagccataaaagtaagtgtttttgtctccatcatgga |
33699559 |
T |
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| Q |
218 |
tttcctattgctaataattggccctcagtgttgaaattgaaaatgagtcaaaccataataaactgtatatattacaggctgagcagatggcagtatgtga |
317 |
Q |
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| T |
33699560 |
tttcctattgc---ttattggccctcagtgtggaaattgaaaatgagtcaaatcataataaactgtatatattacaggctgagcagatggcagtatgtga |
33699656 |
T |
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| Q |
318 |
taccaatgatggagggaagattccagtgacatggggtcagataaaaaatatgccac |
373 |
Q |
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| T |
33699657 |
taccaatgatggagggaagattccattgacatggggtcagataaaaaatatgccac |
33699712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 33658674 - 33658856
Alignment:
| Q |
18 |
ctattaggccatttgttaaactacaaggatgaaaaagggaaaatgttaagtgatgaggaagttgctgataatgtgattggagtactatttgcagctcaag |
117 |
Q |
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||||||||| | || |||||||||||||||||||| || ||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33658674 |
ctattaggcaacttcttaaactacaaggatgaaaatggacaaactctaacagatgaagaaattgctgataatgtgattggagtactatttgcagctcaag |
33658773 |
T |
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| Q |
118 |
atactacagcaagtgttcttacttggattctcaagtatcttcatgatcaccagaaacttcttgaagccataaaagtaagtgtt |
200 |
Q |
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| T |
33658774 |
atactacagcaagtgttcttacttggattctcaagtatcttcatgatcaccagaaacttcttgaagccataaaagtaagtgtt |
33658856 |
T |
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