View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2174_high_6 (Length: 363)

Name: NF2174_high_6
Description: NF2174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2174_high_6
NF2174_high_6
[»] chr1 (8 HSPs)
chr1 (19-355)||(29444415-29444751)
chr1 (95-334)||(29421893-29422139)
chr1 (39-127)||(29454439-29454527)
chr1 (272-331)||(29474635-29474694)
chr1 (89-174)||(29474398-29474483)
chr1 (272-334)||(29454711-29454770)
chr1 (210-264)||(29474485-29474538)
chr1 (89-137)||(29473609-29473657)
[»] chr2 (3 HSPs)
chr2 (43-254)||(11988623-11988837)
chr2 (45-214)||(12007467-12007635)
chr2 (46-226)||(12019961-12020138)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 29444415 - 29444751
Alignment:
Q  19 cttgaatggtgtgagatcatttggtcagataccaaatctacatgacttctttcttttccttttctttccatttggtgtatcacttggtctgtaattgcta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444415 cttgaatggtgtgagatcatttggtcagataccaaatctacatgacttctttcttttccttttctttccatttggtgtatcacttggtctgtaattgcta 29444514  T
Q  119 ggatcctgctataagtaattcaaagaaaaattgcatatatgtctgtttaggtgtaaaagtattgaaaatggtttatatgttatggtgatcaaaagtgttg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29444515 ggatcctgctataagtaattcaaagaaaaattgcatatatgtctgtttaggtgtaaaagtattgaaaatggtttatatgttatggtgatcaaaactgttg 29444614  T
Q  219 aaactttttattatctttgtgattttgtatatatgcttgcatgttaatgtggttttgtttgcttgtgaaaaaactattggcaagtaatctacttgaatgc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444615 aaactttttattatctttgtgattttgtatatatgcttgcatgttaatgtggttttgtttgcttgtgaaaaaactattggcaagtaatctacttgaatgc 29444714  T
Q  319 taattgtgtgacccatgaaaatctatttgcctttgct 355  Q
    |||||||||||||||||||||||||||||| ||||||    
T  29444715 taattgtgtgacccatgaaaatctatttgcttttgct 29444751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 95 - 334
Target Start/End: Complemental strand, 29422139 - 29421893
Alignment:
Q  95 gtatcacttggtctgtaattgctaggatcctgctata--agtaattcaaagaaaaattgcatatatgtctgtttaggtgtaa--aagtattgaaaatggt 190  Q
    |||||||||||||||||| | |||||||| |||||||  |||||| ||||||||||| ||||||||||||||||||||||||  |||| ||||||||||     
T  29422139 gtatcacttggtctgtaaatactaggatcatgctatataagtaatgcaaagaaaaatggcatatatgtctgtttaggtgtaagaaagtgttgaaaatggc 29422040  T
Q  191 ttatatgttat---ggtgatcaaaagtgttgaaactttttattatctttgtgattttgtatatatgcttgcatgttaatgtggttttgtttgcttgtgaa 287  Q
    ||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||     
T  29422039 ttatatgttgttacggtgatcaaaagtgttgaaactttttattatctttgtgattttgtatatatgcatgcatgttaatatggttttgtttgcttgtgag 29421940  T
Q  288 aaaactattggcaagtaatctacttgaatgctaattgtgtgacccat 334  Q
    |||||||||||||||||| |||||||||||||||||| ||| |||||    
T  29421939 aaaactattggcaagtaacctacttgaatgctaattgcgtggcccat 29421893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 29454439 - 29454527
Alignment:
Q  39 ttggtcagataccaaatctacatgacttctttcttttccttttctttccatttggtgtatcacttggtctgtaattgctaggatcctgc 127  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  29454439 ttggtcagatacctaatctacatgacttctttcttttccttttattttcatttggtgtatcacttggtctgtaattgctaggatcctgc 29454527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 29474635 - 29474694
Alignment:
Q  272 tttgtttgcttgtgaaaaaactattggcaagtaatctacttgaatgctaattgtgtgacc 331  Q
    ||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||    
T  29474635 tttgttttcttgtgaaaaaactattggcaagtaacctacttgactactaattgtgtgacc 29474694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 29474398 - 29474483
Alignment:
Q  89 tttggtgtatcacttggtctgtaattgctaggatcctgctataagtaattcaaagaaaaattgcatatatgtctgtttaggtgtaa 174  Q
    ||||||||||  |||||| |||||||||||| ||| ||||||||||||| |||| |||||  || ||||||| |||||||||||||    
T  29474398 tttggtgtatgtcttggtttgtaattgctagtatcttgctataagtaatgcaaacaaaaacggcctatatgtttgtttaggtgtaa 29474483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 334
Target Start/End: Original strand, 29454711 - 29454770
Alignment:
Q  272 tttgtttgcttgtgaaaaaactattggcaagtaatctacttgaatgctaattgtgtgacccat 334  Q
    ||||||||||||||||||||||||||||  |||| ||||||||   ||| |||||||||||||    
T  29454711 tttgtttgcttgtgaaaaaactattggcgggtaacctacttga---ctatttgtgtgacccat 29454770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 29474485 - 29474538
Alignment:
Q  210 aaagtgttgaaactttttattatctttgtgattttgtatatatgcttgcatgtta 264  Q
    ||||||||||||| ||||| ||||||||| |||||||| |||||| |||||||||    
T  29474485 aaagtgttgaaac-ttttagtatctttgtaattttgtacatatgcatgcatgtta 29474538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 29473609 - 29473657
Alignment:
Q  89 tttggtgtatcacttggtctgtaattgctaggatcctgctataagtaat 137  Q
    ||||||||||  |||||| |||||||||||| ||| |||||||||||||    
T  29473609 tttggtgtatgtcttggtttgtaattgctagtatcttgctataagtaat 29473657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 43 - 254
Target Start/End: Original strand, 11988623 - 11988837
Alignment:
Q  43 tcagataccaaatctacatgacttctttcttttccttttctttccatttggtgtatcacttggtctgtaattgctaggatcctgctataagtaattcaaa 142  Q
    |||||||||| || ||||||||||||||||||||||||| |||   |||||| ||||||||||| || |||||||||| ||||| |||||| ||| ||||    
T  11988623 tcagataccatatgtacatgacttctttcttttccttttttttt--tttggtttatcacttggtatgcaattgctaggttcctgttataagcaatacaaa 11988720  T
Q  143 gaaaaattgcatatatgtctgtttaggtgta--aaagtattgaaaatggtttata---tgttatggtgatcaaaagtgttgaaactttttat-tatcttt 236  Q
    |||||||  ||||| || |||||||||||||  ||||| |||||||||  |||||   ||||||| |||| |||||||||||   ||||| |  |||| |    
T  11988721 gaaaaatgccatatttg-ctgtttaggtgtaagaaagtgttgaaaatgacttatatgttgttatgatgataaaaagtgttgattttttttttcaatctat 11988819  T
Q  237 gtgattttgtatatatgc 254  Q
    ||||||||||||||||||    
T  11988820 gtgattttgtatatatgc 11988837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 45 - 214
Target Start/End: Original strand, 12007467 - 12007635
Alignment:
Q  45 agataccaaatctacatgacttctttcttttccttttctttccatttggtgtatcacttggtctgtaattgctaggatcctgctataagtaattcaaaga 144  Q
    |||||||| || |||||||||||| ||||||||||||||||      ||| ||||||||||||||||||||  |  |||||||| |||| ||| ||||||    
T  12007467 agataccatatgtacatgacttctatcttttccttttcttt------ggtttatcacttggtctgtaattgaaaacatcctgctctaagcaatacaaaga 12007560  T
Q  145 aaaattgcatatatgtctgtttaggtgt--aaaagtattgaaaatggtttatat---gttatggtgatcaaaagt 214  Q
    |||||  || ||||||||||||||||||  |||||| |||||||||| ||||||   ||||||||||| ||||||    
T  12007561 aaaatgacacatatgtctgtttaggtgtaaaaaagtgttgaaaatggcttatatgtcgttatggtgataaaaagt 12007635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 226
Target Start/End: Original strand, 12019961 - 12020138
Alignment:
Q  46 gataccaaatctacatgacttctttcttttccttttctttccatttggtgtatcacttggtctgtaattgctaggatcctgctataagtaattcaaagaa 145  Q
    ||||||| || |||||||||||| ||||||||||||| ||      |||||||||| |||||| |||||| |||| |||||||||||| ||| |||  ||    
T  12019961 gataccagatgtacatgacttctatcttttccttttcatt------ggtgtatcacctggtctataattgttaggttcctgctataagcaatacaa--aa 12020052  T
Q  146 aaattgcatatatgtctgtttaggtgta--aaagtattgaaaatggtttatat---gttatggtgatcaaaagtgttgaaactttt 226  Q
    | || |||||||||| ||||||||||||  ||||| |||||||||| ||||||   ||||||||||| |||| |||||||| ||||    
T  12020053 agatggcatatatgtttgtttaggtgtaagaaagtgttgaaaatggcttatatgtcgttatggtgataaaaattgttgaaattttt 12020138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University