View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2174_low_11 (Length: 256)
Name: NF2174_low_11
Description: NF2174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2174_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 6823479 - 6823249
Alignment:
| Q |
11 |
cagagagttatcctagtgggtcatagcttaggtgggatgtgtatatctgtggccatggaattatttcctaagaaaattgcagctgctgtatttgtcacag |
110 |
Q |
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| T |
6823479 |
cagagagttattctagtgggtcatagcttaggtgggatgtgtatatctgtggccatggaattatttcctaagaaaattgcagctgctgtatttgtcacag |
6823380 |
T |
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| Q |
111 |
ctttcatgccttctcctgatctaagcttcttgactcttctccaagaggtactaaattattgctattttgtgtttttcccatatttcatagttatcatcaa |
210 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6823379 |
ctttcatgccttctcctgatctaagcttcctgactcttctccaagaggtactaaattattgctattttgtgtttttcccatatttcatagttatcatcaa |
6823280 |
T |
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| Q |
211 |
ccttgggaacatatgcatgatgcatacatat |
241 |
Q |
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| T |
6823279 |
ccttgggaacatatgcacgatgcatacatat |
6823249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 6807497 - 6807306
Alignment:
| Q |
11 |
cagagagttatcctagtgggtcatagcttaggtgggatgtgtatatctgtggccatggaattatttcctaagaaaattgcagctgctgtatttgtcacag |
110 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
6807497 |
cagagagttattctagtgggtcatagcttgggtgggatgtgtatatctgtggccatggaattatttccaaagaaaattgcagctgctgtatttgttacag |
6807398 |
T |
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| Q |
111 |
ctttcatgccttctcctgatctaagcttcttgactcttctccaagaggtactaaattattgctattttgtgtttttcccatatttcatagtta |
203 |
Q |
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| T |
6807397 |
ctttcatgccttctcctgatctaagctacttgagtctactccaagaggtacttgattatccttattttg-atctttctcatatttcatagtta |
6807306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 6814282 - 6814131
Alignment:
| Q |
11 |
cagagagttatcctagtgggtcatagcttaggtgggatgtgtatatctgtggccatggaattatttcctaagaaaattgcagctgctgtatttgtcacag |
110 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
6814282 |
cagagagttattctagtgggtcatagcttgggtgggatgtgtatatctgtggccatggaattatttccaaagaaaattgcagctgctgtatttgttacag |
6814183 |
T |
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| Q |
111 |
ctttcatgccttctcctgatctaagcttcttgactcttctccaagaggtact |
162 |
Q |
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||||||||||||||||||||||||||| ||||| ||| |||||||||||||| |
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| T |
6814182 |
ctttcatgccttctcctgatctaagctacttgagtctactccaagaggtact |
6814131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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