View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2174_low_12 (Length: 241)
Name: NF2174_low_12
Description: NF2174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2174_low_12 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 2943238 - 2943461
Alignment:
| Q |
17 |
acatttagttcatataagaatttgtttggtcagattatctctagtcagtgagttgaattgactgcatcacatggcaaggaaaataacaaatgcatgtcca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2943238 |
acatttagttcatataagaatttgtttggtcaaat-atctctagtcagtgagttgaattgactgcatcacatggcaaggaaaataacaaatgcatgtcca |
2943336 |
T |
|
| Q |
117 |
gatacttatatttaattaaggtcactacacaatattaattagaatatgtttcaagtttggttatgttgtgttgcagtttgattgctccaaagagatcacg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2943337 |
gatacttatatttaattaaggtcactacacaatattaattagaatatttttcaagtttggttatgttgtgttgcagtttgattgctccaaagagatcacg |
2943436 |
T |
|
| Q |
217 |
ttgatggaggtactatgctgaacca |
241 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2943437 |
ttgatggaggtactatgctgaacca |
2943461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University