View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2174_low_5 (Length: 371)
Name: NF2174_low_5
Description: NF2174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2174_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Complemental strand, 34229346 - 34229001
Alignment:
| Q |
10 |
aagaatattatatctcaatagttagattaatccaatggacgaaatttgatcgaagaggatgtaaatcaacaccaatttaactcatttgattctttcctac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34229346 |
aagaatattatatctcaatagttagattaatccaatggacgaaatttgatcgaagaggatgtaaatcaacaccaatttaactcatttgattctttcctac |
34229247 |
T |
|
| Q |
110 |
attatgcaatggttgccattaaacatggacaatacattcaaactaacaaagtttcatttctggacagaccagaatccattcaaattattgagcatacaag |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34229246 |
agtatgcaatggttgccattaaacatggacaatacattcaaactaacaaagtttcatttctggacagaccagaatccattcaaattattgagcatacaag |
34229147 |
T |
|
| Q |
210 |
taataggatagtaaatcattataaactaactaatataatgattatgtcaggctgagatttccacagccatcctttatagacatggaaggacaaaaatgat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34229146 |
taataggatagtaaatcattataaactaactaatataatgattatgtcaggctgagatttccacagccatcctttatagacatggaaggacaaaaatgat |
34229047 |
T |
|
| Q |
310 |
aaactctaatatatatacttgtggagaaattgcggccgttgaagtg |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34229046 |
aaactctaatatatatacttgtggagaaattgcggccgttgaagtg |
34229001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 30144211 - 30144293
Alignment:
| Q |
241 |
aatataatgattatgtcaggctgagatttccacagccatcctttatagacatggaaggacaaaaatgataaactctaatatata |
324 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| |||| ||||||||| | ||||||| |||||||||||||| |
|
|
| T |
30144211 |
aatataatgatcatgtttggctgagatttccacagccatctcttatgtacatggaagaatcaaaatga-caactctaatatata |
30144293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 50 - 355
Target Start/End: Complemental strand, 28344304 - 28343993
Alignment:
| Q |
50 |
gaaatttgatcgaagaggatgtaaatcaacaccaatttaactcatttgattctttcctacattatgcaatggttgccattaaacatggacaatacattca |
149 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28344304 |
gaaatttggccgaagaggatgtaaatcaacaccaatttaagtcatttgattatttcctacattatgcaatggttgccattaaacatgaacaatacattca |
28344205 |
T |
|
| Q |
150 |
aactaacaaagtttcatttctggacagaccagaatccattcaaattattgagcatacaagtaataggatagtaaatcattataa------actaactaat |
243 |
Q |
| |
|
||||| |||||||||| |||| |||| |||||||||||||||||||||||||||||||||| ||| |||||||||| || |||| |||| ||| |
|
|
| T |
28344204 |
aactaccaaagtttcaattctagacaaaccagaatccattcaaattattgagcatacaagtgataagatagtaaattatgataattaatttataacgaat |
28344105 |
T |
|
| Q |
244 |
ataatgattatgtcaggctgagatttccacagccatcctttatagacatggaaggacaaaaatgataaactctaatatatatacttgtggagaaattgcg |
343 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
28344104 |
gtaatgatcatgtcaggctgagatttccacagccatattttatagacatggaaggacaaaaatgataaactctaatatatatacttgtgggaaaattgtg |
28344005 |
T |
|
| Q |
344 |
gccgttgaagtg |
355 |
Q |
| |
|
||| |||||||| |
|
|
| T |
28344004 |
gcctttgaagtg |
28343993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 50 - 355
Target Start/End: Complemental strand, 981939 - 981641
Alignment:
| Q |
50 |
gaaatttgatcgaagaggatgtaaatcaacaccaatttaactcatttgattctttcctacattatgcaatggttgccattaaacatggacaatacattca |
149 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
981939 |
gaaatttggccgaagaggatgtaaatcaacaccaatttaagtcattttattatttcctacattatgcaatggttgcctttaaacatggacaatacattca |
981840 |
T |
|
| Q |
150 |
aactaacaaagtttcatttctggacagaccagaatccattcaaattattgagcatacaagtaataggatagtaaatcattataaacta--actaatataa |
247 |
Q |
| |
|
| ||| ||||||| |||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||| || |||||| ||| |
|
|
| T |
981839 |
agctaccaaagtt---------gacaaaccagaatccattcaaattattgagcatacaagtgataagatagtaaatcatgataatttataactaatgtaa |
981749 |
T |
|
| Q |
248 |
tgattatgtcaggctgagatttccacagccatcctttatagacatggaaggacaaaaatgataaactctaatatatatacttgtggagaaattgcggccg |
347 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
981748 |
tgatcatgtcaggctgagatttccacaaccatattttatagacatggaaggacaaaaatgataaactctaatatatatacttgtggggaaattgcggcct |
981649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 37899556 - 37899489
Alignment:
| Q |
138 |
acaatacattcaaactaacaaagtttcatttctggacagaccagaatccattcaaattattgagcataca |
207 |
Q |
| |
|
||||||||||||||||||||| ||| |||| |||| || ||||||||||||||||||||||||||||| |
|
|
| T |
37899556 |
acaatacattcaaactaacaa-gttcgattt-tggatagcacagaatccattcaaattattgagcataca |
37899489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 9784313 - 9784377
Alignment:
| Q |
140 |
aatacattcaaactaacaaagtttcatttctggacagaccagaatccattcaaattattgagcata |
205 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||| | || ||||||| || ||||||||||||| |
|
|
| T |
9784313 |
aatacattcaaacttacaaagtt-catttgtggacaaagcataatccatacagattattgagcata |
9784377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University