View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2174_low_8 (Length: 307)
Name: NF2174_low_8
Description: NF2174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2174_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 117 - 292
Target Start/End: Complemental strand, 389005 - 388829
Alignment:
| Q |
117 |
tcgcacaagaagaacataccggaaattataattaaaatgtgtgaacacgtcattt-aaacattggttactctttccactttgtcatagaaattgcatttc |
215 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
389005 |
tcgctcaagaaaaacataccggaaattataattaaaatgtgtgaacacatcattttaaacattggttactctttccactttgtcatagaaattgcatttc |
388906 |
T |
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| Q |
216 |
cccgtttcttacaagtcatcacgccatggaaaaatttaaagtgagcatttgctactttgagccataacaacctctct |
292 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
388905 |
cccgtttcttacgagtcatcacgccatggaaaaatttagagtgagcatttgctactttgagccataacaacctctct |
388829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 389191 - 389087
Alignment:
| Q |
14 |
atcaccttttagatcctcccataagtttttgtcgaaaccaaaatttatgtcatctagacatgaactcttaaaaatatcacaatctcaaactgtcatctta |
113 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| |
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| T |
389191 |
atcaccttttagatcctcccataagtctttgacgaaaccaaaatttatgtcatctaaacttggactcttaaaaatatcacaatctcaaactgtcatctta |
389092 |
T |
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| Q |
114 |
acctc |
118 |
Q |
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||||| |
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| T |
389091 |
acctc |
389087 |
T |
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